FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628536_s_at:

>probe:Drosophila_2:1628536_s_at:208:127; Interrogation_Position=2615; Antisense; ACCACGGTGGTGGTAATTGCCGCCT
>probe:Drosophila_2:1628536_s_at:712:653; Interrogation_Position=2628; Antisense; TAATTGCCGCCTTTCTCATAACGAG
>probe:Drosophila_2:1628536_s_at:707:637; Interrogation_Position=2643; Antisense; TCATAACGAGCGTGTTTTTCGGTGT
>probe:Drosophila_2:1628536_s_at:53:701; Interrogation_Position=2658; Antisense; TTTTCGGTGTGTACTCGACGGCAGT
>probe:Drosophila_2:1628536_s_at:65:85; Interrogation_Position=2680; Antisense; AGTGGACACACTGTTTCTGTGCTTC
>probe:Drosophila_2:1628536_s_at:8:275; Interrogation_Position=2701; Antisense; CTTCCTGGAGGACTGCGAGCGCAAC
>probe:Drosophila_2:1628536_s_at:310:379; Interrogation_Position=2740; Antisense; GAAGCCGTTCTTCATGTCCAAGCAG
>probe:Drosophila_2:1628536_s_at:442:647; Interrogation_Position=2806; Antisense; TCAGCGCCGCGGAAAGTAGGAGACA
>probe:Drosophila_2:1628536_s_at:507:609; Interrogation_Position=2911; Antisense; TGAGCGATTGCTCAACCGGCTGCAA
>probe:Drosophila_2:1628536_s_at:724:13; Interrogation_Position=2946; Antisense; ATTAAATGCACGCTCCTTTGCCAAT
>probe:Drosophila_2:1628536_s_at:167:631; Interrogation_Position=2959; Antisense; TCCTTTGCCAATACTCTTAATCTTT
>probe:Drosophila_2:1628536_s_at:116:655; Interrogation_Position=2997; Antisense; TAATACGCCAGTATCCGTATCCATA
>probe:Drosophila_2:1628536_s_at:165:473; Interrogation_Position=3023; Antisense; GTAAAGTTTTTTGTGCGGCTAGACA
>probe:Drosophila_2:1628536_s_at:550:103; Interrogation_Position=3043; Antisense; AGACATGTGATAGGCGCGGACCATA

Paste this into a BLAST search page for me
ACCACGGTGGTGGTAATTGCCGCCTTAATTGCCGCCTTTCTCATAACGAGTCATAACGAGCGTGTTTTTCGGTGTTTTTCGGTGTGTACTCGACGGCAGTAGTGGACACACTGTTTCTGTGCTTCCTTCCTGGAGGACTGCGAGCGCAACGAAGCCGTTCTTCATGTCCAAGCAGTCAGCGCCGCGGAAAGTAGGAGACATGAGCGATTGCTCAACCGGCTGCAAATTAAATGCACGCTCCTTTGCCAATTCCTTTGCCAATACTCTTAATCTTTTAATACGCCAGTATCCGTATCCATAGTAAAGTTTTTTGTGCGGCTAGACAAGACATGTGATAGGCGCGGACCATA

Full Affymetrix probeset data:

Annotations for 1628536_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720