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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628543_a_at:

>probe:Drosophila_2:1628543_a_at:18:317; Interrogation_Position=1515; Antisense; GCCGGACTGACCCTGGAAGATACCA
>probe:Drosophila_2:1628543_a_at:386:255; Interrogation_Position=1541; Antisense; CAAAATCTACAATCTGAGGGCCAGC
>probe:Drosophila_2:1628543_a_at:338:249; Interrogation_Position=1565; Antisense; CAATGAACTGGGACTGACGGACTAC
>probe:Drosophila_2:1628543_a_at:81:555; Interrogation_Position=1583; Antisense; GGACTACCAGGTGCGAATCAGTTCG
>probe:Drosophila_2:1628543_a_at:200:365; Interrogation_Position=1597; Antisense; GAATCAGTTCGTCGAGCAAACCGCC
>probe:Drosophila_2:1628543_a_at:435:113; Interrogation_Position=1623; Antisense; AGCAGCAGCCTCGATGTGGCGGCAA
>probe:Drosophila_2:1628543_a_at:328:361; Interrogation_Position=1644; Antisense; GCAATCGTTGGCATTGTGGTCGCCG
>probe:Drosophila_2:1628543_a_at:608:699; Interrogation_Position=1675; Antisense; TTTTGGTCCTGGTCGTTTTACTGAT
>probe:Drosophila_2:1628543_a_at:27:143; Interrogation_Position=1694; Antisense; ACTGATTGTGTTTGCACGGGCTACT
>probe:Drosophila_2:1628543_a_at:574:303; Interrogation_Position=1721; Antisense; CCGATGGTGTTTTGGCGGCAAATCA
>probe:Drosophila_2:1628543_a_at:67:145; Interrogation_Position=1780; Antisense; ACTCGTCTATGCTGAACTTGTACTA
>probe:Drosophila_2:1628543_a_at:542:159; Interrogation_Position=1865; Antisense; ACAACAACGCCGGAGGGCTCTGGAG
>probe:Drosophila_2:1628543_a_at:319:365; Interrogation_Position=1910; Antisense; GAATACGCCGAAATAGTCTATGTGC
>probe:Drosophila_2:1628543_a_at:420:185; Interrogation_Position=1978; Antisense; AAAATCCCTGGGAGGCTGACACAGT

Paste this into a BLAST search page for me
GCCGGACTGACCCTGGAAGATACCACAAAATCTACAATCTGAGGGCCAGCCAATGAACTGGGACTGACGGACTACGGACTACCAGGTGCGAATCAGTTCGGAATCAGTTCGTCGAGCAAACCGCCAGCAGCAGCCTCGATGTGGCGGCAAGCAATCGTTGGCATTGTGGTCGCCGTTTTGGTCCTGGTCGTTTTACTGATACTGATTGTGTTTGCACGGGCTACTCCGATGGTGTTTTGGCGGCAAATCAACTCGTCTATGCTGAACTTGTACTAACAACAACGCCGGAGGGCTCTGGAGGAATACGCCGAAATAGTCTATGTGCAAAATCCCTGGGAGGCTGACACAGT

Full Affymetrix probeset data:

Annotations for 1628543_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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