FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628556_s_at:

>probe:Drosophila_2:1628556_s_at:522:487; Interrogation_Position=2149; Antisense; GTACCACCACTACTGCAGGAAATCA
>probe:Drosophila_2:1628556_s_at:519:677; Interrogation_Position=2180; Antisense; TAGAGCATCTGTGGCAGTACACCGA
>probe:Drosophila_2:1628556_s_at:254:637; Interrogation_Position=2263; Antisense; TCGTCGTCATCGTCAGGTACATCCT
>probe:Drosophila_2:1628556_s_at:527:147; Interrogation_Position=2316; Antisense; ACTACTGGCTAGTGCTGGTCTCTCG
>probe:Drosophila_2:1628556_s_at:144:591; Interrogation_Position=2331; Antisense; TGGTCTCTCGTCCAATGGCGAGAAT
>probe:Drosophila_2:1628556_s_at:348:369; Interrogation_Position=2352; Antisense; GAATGCCAATCCTGATCTTATCGCT
>probe:Drosophila_2:1628556_s_at:88:703; Interrogation_Position=2369; Antisense; TTATCGCTCATCTCTGCAACGTGGC
>probe:Drosophila_2:1628556_s_at:276:139; Interrogation_Position=2387; Antisense; ACGTGGCTGATCACCGTCTTTATAA
>probe:Drosophila_2:1628556_s_at:504:213; Interrogation_Position=2428; Antisense; AAGAGCTTGCCGCTTTTTAAGAACA
>probe:Drosophila_2:1628556_s_at:482:451; Interrogation_Position=2457; Antisense; GATCGATGACCAAATCTGCTTGCTC
>probe:Drosophila_2:1628556_s_at:495:343; Interrogation_Position=2474; Antisense; GCTTGCTCATTAACTCGTGGTGCGA
>probe:Drosophila_2:1628556_s_at:378:281; Interrogation_Position=2506; Antisense; CTCTTCTCCTGCTGTTTTAGATCAA
>probe:Drosophila_2:1628556_s_at:364:97; Interrogation_Position=2524; Antisense; AGATCAATTGATACTCCTGGAGAGA
>probe:Drosophila_2:1628556_s_at:98:563; Interrogation_Position=2567; Antisense; GGAAGATAACCCTATCGCAGGCCAA

Paste this into a BLAST search page for me
GTACCACCACTACTGCAGGAAATCATAGAGCATCTGTGGCAGTACACCGATCGTCGTCATCGTCAGGTACATCCTACTACTGGCTAGTGCTGGTCTCTCGTGGTCTCTCGTCCAATGGCGAGAATGAATGCCAATCCTGATCTTATCGCTTTATCGCTCATCTCTGCAACGTGGCACGTGGCTGATCACCGTCTTTATAAAAGAGCTTGCCGCTTTTTAAGAACAGATCGATGACCAAATCTGCTTGCTCGCTTGCTCATTAACTCGTGGTGCGACTCTTCTCCTGCTGTTTTAGATCAAAGATCAATTGATACTCCTGGAGAGAGGAAGATAACCCTATCGCAGGCCAA

Full Affymetrix probeset data:

Annotations for 1628556_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720