FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628598_s_at:

>probe:Drosophila_2:1628598_s_at:355:689; Interrogation_Position=2095; Antisense; TATTCTCTACAGCTACTCGTTCAAC
>probe:Drosophila_2:1628598_s_at:142:71; Interrogation_Position=2160; Antisense; AGGCGGATCGCATCCTCCTGATGGA
>probe:Drosophila_2:1628598_s_at:218:441; Interrogation_Position=2179; Antisense; GATGGACACGTTCTTTCAGATTCTG
>probe:Drosophila_2:1628598_s_at:211:463; Interrogation_Position=2197; Antisense; GATTCTGATTTACCACGGCGAGACC
>probe:Drosophila_2:1628598_s_at:419:551; Interrogation_Position=2232; Antisense; GGAGAGCCCTCAAATACCAGGACAT
>probe:Drosophila_2:1628598_s_at:256:209; Interrogation_Position=2289; Antisense; AAGCACCGGTGGACGACGCGCAAGA
>probe:Drosophila_2:1628598_s_at:345:361; Interrogation_Position=2308; Antisense; GCAAGAGATTCTTCAGACGCGCTTC
>probe:Drosophila_2:1628598_s_at:677:667; Interrogation_Position=2345; Antisense; TACATCGATACGGAGCACGGCGGAT
>probe:Drosophila_2:1628598_s_at:252:253; Interrogation_Position=2419; Antisense; CAACATGTACGCCTACGGGCAGGAT
>probe:Drosophila_2:1628598_s_at:404:141; Interrogation_Position=2462; Antisense; ACGGATGACGTTTCGCTGCAGCTGT
>probe:Drosophila_2:1628598_s_at:685:617; Interrogation_Position=2478; Antisense; TGCAGCTGTTCATGGAGCACCTCAA
>probe:Drosophila_2:1628598_s_at:363:653; Interrogation_Position=2499; Antisense; TCAAGAAGCTGGCTGTGTCCACCAC
>probe:Drosophila_2:1628598_s_at:412:203; Interrogation_Position=2530; Antisense; AATCGACTCTGGCTCTAGTTTCAGG
>probe:Drosophila_2:1628598_s_at:455:371; Interrogation_Position=2580; Antisense; GAAGGCGAACGACACCTGGAATCAA

Paste this into a BLAST search page for me
TATTCTCTACAGCTACTCGTTCAACAGGCGGATCGCATCCTCCTGATGGAGATGGACACGTTCTTTCAGATTCTGGATTCTGATTTACCACGGCGAGACCGGAGAGCCCTCAAATACCAGGACATAAGCACCGGTGGACGACGCGCAAGAGCAAGAGATTCTTCAGACGCGCTTCTACATCGATACGGAGCACGGCGGATCAACATGTACGCCTACGGGCAGGATACGGATGACGTTTCGCTGCAGCTGTTGCAGCTGTTCATGGAGCACCTCAATCAAGAAGCTGGCTGTGTCCACCACAATCGACTCTGGCTCTAGTTTCAGGGAAGGCGAACGACACCTGGAATCAA

Full Affymetrix probeset data:

Annotations for 1628598_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720