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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628663_s_at:

>probe:Drosophila_2:1628663_s_at:8:419; Interrogation_Position=1307; Antisense; GAGCTTTTTAGCGACATCGGCCCAG
>probe:Drosophila_2:1628663_s_at:402:41; Interrogation_Position=1322; Antisense; ATCGGCCCAGTGTACGACGCTCGTG
>probe:Drosophila_2:1628663_s_at:307:133; Interrogation_Position=1338; Antisense; ACGCTCGTGTGGTGCGTCCCGGCAC
>probe:Drosophila_2:1628663_s_at:238:557; Interrogation_Position=1358; Antisense; GGCACCGCCGAAGTTATTTACAAGT
>probe:Drosophila_2:1628663_s_at:200:665; Interrogation_Position=1376; Antisense; TACAAGTCACTGGAACATGCCGAGA
>probe:Drosophila_2:1628663_s_at:298:385; Interrogation_Position=1388; Antisense; GAACATGCCGAGAAGGCCGTAGATA
>probe:Drosophila_2:1628663_s_at:636:369; Interrogation_Position=1399; Antisense; GAAGGCCGTAGATACCTATCACCAT
>probe:Drosophila_2:1628663_s_at:713:677; Interrogation_Position=1407; Antisense; TAGATACCTATCACCATCGTCAGTT
>probe:Drosophila_2:1628663_s_at:153:43; Interrogation_Position=1422; Antisense; ATCGTCAGTTCGATGACCAGCCCAT
>probe:Drosophila_2:1628663_s_at:336:55; Interrogation_Position=1434; Antisense; ATGACCAGCCCATGCACTGTGTGCT
>probe:Drosophila_2:1628663_s_at:71:353; Interrogation_Position=1506; Antisense; GCACCGTGACCACAAACTCGTCTGG
>probe:Drosophila_2:1628663_s_at:282:255; Interrogation_Position=1516; Antisense; CACAAACTCGTCTGGCGTGGAGGTG
>probe:Drosophila_2:1628663_s_at:298:435; Interrogation_Position=1535; Antisense; GAGGTGGACATCGATGCACTTCACT
>probe:Drosophila_2:1628663_s_at:728:353; Interrogation_Position=1550; Antisense; GCACTTCACTCGGTACTCTTCAGGG

Paste this into a BLAST search page for me
GAGCTTTTTAGCGACATCGGCCCAGATCGGCCCAGTGTACGACGCTCGTGACGCTCGTGTGGTGCGTCCCGGCACGGCACCGCCGAAGTTATTTACAAGTTACAAGTCACTGGAACATGCCGAGAGAACATGCCGAGAAGGCCGTAGATAGAAGGCCGTAGATACCTATCACCATTAGATACCTATCACCATCGTCAGTTATCGTCAGTTCGATGACCAGCCCATATGACCAGCCCATGCACTGTGTGCTGCACCGTGACCACAAACTCGTCTGGCACAAACTCGTCTGGCGTGGAGGTGGAGGTGGACATCGATGCACTTCACTGCACTTCACTCGGTACTCTTCAGGG

Full Affymetrix probeset data:

Annotations for 1628663_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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