FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628664_at:

>probe:Drosophila_2:1628664_at:223:85; Interrogation_Position=2653; Antisense; AGTGATGCGGGCTGTCCTGTCATTC
>probe:Drosophila_2:1628664_at:395:497; Interrogation_Position=2671; Antisense; GTCATTCTCTTCTCCCTTTAAAATA
>probe:Drosophila_2:1628664_at:355:189; Interrogation_Position=2695; Antisense; AACATTCACTAAGTCCTTCCAAGGA
>probe:Drosophila_2:1628664_at:232:721; Interrogation_Position=2711; Antisense; TTCCAAGGACTTAGGCCTGCCTATA
>probe:Drosophila_2:1628664_at:117:665; Interrogation_Position=2722; Antisense; TAGGCCTGCCTATACCAAAACAAAA
>probe:Drosophila_2:1628664_at:358:129; Interrogation_Position=2762; Antisense; ACCAGCGACTGCGTTTGCGATGAGG
>probe:Drosophila_2:1628664_at:166:547; Interrogation_Position=2785; Antisense; GGATGAGTTCCTAAATCTGGGCAAG
>probe:Drosophila_2:1628664_at:261:673; Interrogation_Position=2815; Antisense; TAGCCACGACGAGGGCACAGACGCT
>probe:Drosophila_2:1628664_at:11:487; Interrogation_Position=2853; Antisense; GTAGCGGTGGACTATCCTTTTCTAT
>probe:Drosophila_2:1628664_at:161:191; Interrogation_Position=2909; Antisense; AACTTGTAGTACTGCCTTGTTTGCT
>probe:Drosophila_2:1628664_at:15:689; Interrogation_Position=3060; Antisense; TATTTGTGTTTGTTTCCCTTAGCCG
>probe:Drosophila_2:1628664_at:212:541; Interrogation_Position=3145; Antisense; GGTTTATAGCACCATTAATTCACTT
>probe:Drosophila_2:1628664_at:199:709; Interrogation_Position=3177; Antisense; TTCACCCCACCAAGTCTGCAAAAAA
>probe:Drosophila_2:1628664_at:246:29; Interrogation_Position=3214; Antisense; ATAAATCCGGATGCCAAATGGTTTT

Paste this into a BLAST search page for me
AGTGATGCGGGCTGTCCTGTCATTCGTCATTCTCTTCTCCCTTTAAAATAAACATTCACTAAGTCCTTCCAAGGATTCCAAGGACTTAGGCCTGCCTATATAGGCCTGCCTATACCAAAACAAAAACCAGCGACTGCGTTTGCGATGAGGGGATGAGTTCCTAAATCTGGGCAAGTAGCCACGACGAGGGCACAGACGCTGTAGCGGTGGACTATCCTTTTCTATAACTTGTAGTACTGCCTTGTTTGCTTATTTGTGTTTGTTTCCCTTAGCCGGGTTTATAGCACCATTAATTCACTTTTCACCCCACCAAGTCTGCAAAAAAATAAATCCGGATGCCAAATGGTTTT

Full Affymetrix probeset data:

Annotations for 1628664_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720