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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628671_a_at:

>probe:Drosophila_2:1628671_a_at:627:583; Interrogation_Position=14685; Antisense; TGGCACCACCTACGAGGAGGATTCG
>probe:Drosophila_2:1628671_a_at:722:125; Interrogation_Position=14689; Antisense; ACCACCTACGAGGAGGATTCGGGCA
>probe:Drosophila_2:1628671_a_at:342:279; Interrogation_Position=14694; Antisense; CTACGAGGAGGATTCGGGCATCTTT
>probe:Drosophila_2:1628671_a_at:77:437; Interrogation_Position=14701; Antisense; GAGGATTCGGGCATCTTTACTGTGC
>probe:Drosophila_2:1628671_a_at:373:463; Interrogation_Position=14704; Antisense; GATTCGGGCATCTTTACTGTGCGCG
>probe:Drosophila_2:1628671_a_at:592:639; Interrogation_Position=14707; Antisense; TCGGGCATCTTTACTGTGCGCGTAA
>probe:Drosophila_2:1628671_a_at:28:525; Interrogation_Position=14709; Antisense; GGGCATCTTTACTGTGCGCGTAACC
>probe:Drosophila_2:1628671_a_at:402:345; Interrogation_Position=14711; Antisense; GCATCTTTACTGTGCGCGTAACCTC
>probe:Drosophila_2:1628671_a_at:224:699; Interrogation_Position=14716; Antisense; TTTACTGTGCGCGTAACCTCGTCCA
>probe:Drosophila_2:1628671_a_at:2:289; Interrogation_Position=14742; Antisense; CGGCCAGGTTGAATCCTCAGCCAAA
>probe:Drosophila_2:1628671_a_at:22:269; Interrogation_Position=14746; Antisense; CAGGTTGAATCCTCAGCCAAACTGA
>probe:Drosophila_2:1628671_a_at:140:469; Interrogation_Position=14749; Antisense; GTTGAATCCTCAGCCAAACTGACTG
>probe:Drosophila_2:1628671_a_at:385:367; Interrogation_Position=14752; Antisense; GAATCCTCAGCCAAACTGACTGTTA
>probe:Drosophila_2:1628671_a_at:208:629; Interrogation_Position=14755; Antisense; TCCTCAGCCAAACTGACTGTTAAAA

Paste this into a BLAST search page for me
TGGCACCACCTACGAGGAGGATTCGACCACCTACGAGGAGGATTCGGGCACTACGAGGAGGATTCGGGCATCTTTGAGGATTCGGGCATCTTTACTGTGCGATTCGGGCATCTTTACTGTGCGCGTCGGGCATCTTTACTGTGCGCGTAAGGGCATCTTTACTGTGCGCGTAACCGCATCTTTACTGTGCGCGTAACCTCTTTACTGTGCGCGTAACCTCGTCCACGGCCAGGTTGAATCCTCAGCCAAACAGGTTGAATCCTCAGCCAAACTGAGTTGAATCCTCAGCCAAACTGACTGGAATCCTCAGCCAAACTGACTGTTATCCTCAGCCAAACTGACTGTTAAAA

Full Affymetrix probeset data:

Annotations for 1628671_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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