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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628686_a_at:

>probe:Drosophila_2:1628686_a_at:237:419; Interrogation_Position=2154; Antisense; GAGCTCAAAGCCAGAACACCGGAGA
>probe:Drosophila_2:1628686_a_at:647:95; Interrogation_Position=2188; Antisense; AGATAGCGAGGCAACGCCACCATTG
>probe:Drosophila_2:1628686_a_at:415:99; Interrogation_Position=2232; Antisense; AGATGATTCCATTCAAGCCGCGTCC
>probe:Drosophila_2:1628686_a_at:612:723; Interrogation_Position=2283; Antisense; TTGCAGGTGGTGTATTTCCGCAGCC
>probe:Drosophila_2:1628686_a_at:328:587; Interrogation_Position=2359; Antisense; TGGACCGTTCGTCAGCGTAGAGCTA
>probe:Drosophila_2:1628686_a_at:108:487; Interrogation_Position=2375; Antisense; GTAGAGCTACTATTCGACATTTTCA
>probe:Drosophila_2:1628686_a_at:665:701; Interrogation_Position=2394; Antisense; TTTTCATGCGTCTCAATCTTCCGGA
>probe:Drosophila_2:1628686_a_at:370:641; Interrogation_Position=2420; Antisense; TCTGCACCGCAACCGAATGGAGACA
>probe:Drosophila_2:1628686_a_at:373:363; Interrogation_Position=2447; Antisense; GAATTGTCGCCTAAGATCTTCGATC
>probe:Drosophila_2:1628686_a_at:720:451; Interrogation_Position=2468; Antisense; GATCTGGCCAAGTCGGTTCACTGGA
>probe:Drosophila_2:1628686_a_at:97:535; Interrogation_Position=2518; Antisense; GGTGCAGCACAGTGTTACGGCCGTT
>probe:Drosophila_2:1628686_a_at:580:677; Interrogation_Position=2581; Antisense; TAGTGACGACGAACTGCAGACCGCT
>probe:Drosophila_2:1628686_a_at:275:459; Interrogation_Position=2621; Antisense; GATATATATCGCCTGCGTCAGCTAA
>probe:Drosophila_2:1628686_a_at:695:203; Interrogation_Position=2645; Antisense; AAGCGTTTCGCCAAGTCTAATTAAG

Paste this into a BLAST search page for me
GAGCTCAAAGCCAGAACACCGGAGAAGATAGCGAGGCAACGCCACCATTGAGATGATTCCATTCAAGCCGCGTCCTTGCAGGTGGTGTATTTCCGCAGCCTGGACCGTTCGTCAGCGTAGAGCTAGTAGAGCTACTATTCGACATTTTCATTTTCATGCGTCTCAATCTTCCGGATCTGCACCGCAACCGAATGGAGACAGAATTGTCGCCTAAGATCTTCGATCGATCTGGCCAAGTCGGTTCACTGGAGGTGCAGCACAGTGTTACGGCCGTTTAGTGACGACGAACTGCAGACCGCTGATATATATCGCCTGCGTCAGCTAAAAGCGTTTCGCCAAGTCTAATTAAG

Full Affymetrix probeset data:

Annotations for 1628686_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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