FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628717_a_at:

>probe:Drosophila_2:1628717_a_at:449:175; Interrogation_Position=6730; Antisense; AAACTGTGTCACCTGGGCAATGCAT
>probe:Drosophila_2:1628717_a_at:426:199; Interrogation_Position=6788; Antisense; AACGACTGGTACTTCGAGCAGCTGT
>probe:Drosophila_2:1628717_a_at:27:523; Interrogation_Position=6908; Antisense; GTGGCCGCCTCTTGCAGTAATATCA
>probe:Drosophila_2:1628717_a_at:363:23; Interrogation_Position=6927; Antisense; ATATCACTACGACTAGCTGTGCCAC
>probe:Drosophila_2:1628717_a_at:25:317; Interrogation_Position=6965; Antisense; GCCTCATCTTGTACAGTCTATTCGA
>probe:Drosophila_2:1628717_a_at:193:89; Interrogation_Position=6979; Antisense; AGTCTATTCGATCGGCAGTGTGCAC
>probe:Drosophila_2:1628717_a_at:477:455; Interrogation_Position=7021; Antisense; GATCAATATCACCTATGTCCAGCAA
>probe:Drosophila_2:1628717_a_at:126:203; Interrogation_Position=7044; Antisense; AACCATCGGACTTGCAACAGCGCAG
>probe:Drosophila_2:1628717_a_at:374:133; Interrogation_Position=7080; Antisense; ACCGCTCGTTAATGGCTCAGTGCAG
>probe:Drosophila_2:1628717_a_at:480:227; Interrogation_Position=7090; Antisense; AATGGCTCAGTGCAGGCGGTTCCTA
>probe:Drosophila_2:1628717_a_at:416:729; Interrogation_Position=7128; Antisense; TTGGCCAGCGATTGGTCATGGGCTT
>probe:Drosophila_2:1628717_a_at:500:269; Interrogation_Position=7144; Antisense; CATGGGCTTTGCATTGCTGGTCATG
>probe:Drosophila_2:1628717_a_at:185:505; Interrogation_Position=7177; Antisense; GTCCTTGCATCTGGCGGACAAGCTA
>probe:Drosophila_2:1628717_a_at:201:605; Interrogation_Position=7209; Antisense; TGATCACTGGCATCTTGTCGGGAAT

Paste this into a BLAST search page for me
AAACTGTGTCACCTGGGCAATGCATAACGACTGGTACTTCGAGCAGCTGTGTGGCCGCCTCTTGCAGTAATATCAATATCACTACGACTAGCTGTGCCACGCCTCATCTTGTACAGTCTATTCGAAGTCTATTCGATCGGCAGTGTGCACGATCAATATCACCTATGTCCAGCAAAACCATCGGACTTGCAACAGCGCAGACCGCTCGTTAATGGCTCAGTGCAGAATGGCTCAGTGCAGGCGGTTCCTATTGGCCAGCGATTGGTCATGGGCTTCATGGGCTTTGCATTGCTGGTCATGGTCCTTGCATCTGGCGGACAAGCTATGATCACTGGCATCTTGTCGGGAAT

Full Affymetrix probeset data:

Annotations for 1628717_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720