FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628744_s_at:

>probe:Drosophila_2:1628744_s_at:623:717; Interrogation_Position=1170; Antisense; TTCGTGCGTCGCCACGGATTGGAAA
>probe:Drosophila_2:1628744_s_at:201:423; Interrogation_Position=1221; Antisense; GAGATGGCCAGTGACCCGGCGTCCA
>probe:Drosophila_2:1628744_s_at:144:309; Interrogation_Position=1243; Antisense; CCACCTTTGCCGACAAGAGCTTGAT
>probe:Drosophila_2:1628744_s_at:677:719; Interrogation_Position=1273; Antisense; TTGCTGGAACCGATATGACCCGTCT
>probe:Drosophila_2:1628744_s_at:279:539; Interrogation_Position=1327; Antisense; GGTACAAGCCCCAGGATGTCCAGGT
>probe:Drosophila_2:1628744_s_at:683:519; Interrogation_Position=1353; Antisense; GTGGAACTGCACGATTGCTTCTCGG
>probe:Drosophila_2:1628744_s_at:266:619; Interrogation_Position=1368; Antisense; TGCTTCTCGGCCAACGAGTTGATCA
>probe:Drosophila_2:1628744_s_at:163:455; Interrogation_Position=1388; Antisense; GATCACGTATGAGGCACTTGGACTG
>probe:Drosophila_2:1628744_s_at:416:135; Interrogation_Position=1444; Antisense; ACGCTGGAGACAACACCTACGGTGG
>probe:Drosophila_2:1628744_s_at:25:669; Interrogation_Position=1461; Antisense; TACGGTGGCAAGTTCGTGGTCAACC
>probe:Drosophila_2:1628744_s_at:481:515; Interrogation_Position=1476; Antisense; GTGGTCAACCCCAGTGGTGGTCTGA
>probe:Drosophila_2:1628744_s_at:714:521; Interrogation_Position=1491; Antisense; GGTGGTCTGATCTCGAAGGGCCATC
>probe:Drosophila_2:1628744_s_at:134:161; Interrogation_Position=1538; Antisense; ACAATGTGCTGAGCTCTGCTGGCAG
>probe:Drosophila_2:1628744_s_at:325:609; Interrogation_Position=1577; Antisense; TGAGAAGCGCCAGGTGCCCAATGCT

Paste this into a BLAST search page for me
TTCGTGCGTCGCCACGGATTGGAAAGAGATGGCCAGTGACCCGGCGTCCACCACCTTTGCCGACAAGAGCTTGATTTGCTGGAACCGATATGACCCGTCTGGTACAAGCCCCAGGATGTCCAGGTGTGGAACTGCACGATTGCTTCTCGGTGCTTCTCGGCCAACGAGTTGATCAGATCACGTATGAGGCACTTGGACTGACGCTGGAGACAACACCTACGGTGGTACGGTGGCAAGTTCGTGGTCAACCGTGGTCAACCCCAGTGGTGGTCTGAGGTGGTCTGATCTCGAAGGGCCATCACAATGTGCTGAGCTCTGCTGGCAGTGAGAAGCGCCAGGTGCCCAATGCT

Full Affymetrix probeset data:

Annotations for 1628744_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720