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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628759_a_at:

>probe:Drosophila_2:1628759_a_at:5:293; Interrogation_Position=6335; Antisense; CGTCGAAGGTTGTGCTCATCAAATA
>probe:Drosophila_2:1628759_a_at:84:509; Interrogation_Position=6346; Antisense; GTGCTCATCAAATACAACGACAGTG
>probe:Drosophila_2:1628759_a_at:136:139; Interrogation_Position=6365; Antisense; ACAGTGTACGGAACTTGTTGGGCGT
>probe:Drosophila_2:1628759_a_at:312:467; Interrogation_Position=6381; Antisense; GTTGGGCGTTAAGACCATTTTAATG
>probe:Drosophila_2:1628759_a_at:626:131; Interrogation_Position=6414; Antisense; ACCGAGATATCTTTAGCGATTGGAC
>probe:Drosophila_2:1628759_a_at:317:547; Interrogation_Position=6480; Antisense; GGATGAGCATAGTACTAACTGAACA
>probe:Drosophila_2:1628759_a_at:513:491; Interrogation_Position=6594; Antisense; GTAACTAGTTTTTACTCACACGTCT
>probe:Drosophila_2:1628759_a_at:276:147; Interrogation_Position=6607; Antisense; ACTCACACGTCTTTGTCTTTGGAAG
>probe:Drosophila_2:1628759_a_at:75:221; Interrogation_Position=6674; Antisense; AAGTGATACAAAGGTGCTATACACA
>probe:Drosophila_2:1628759_a_at:335:535; Interrogation_Position=6686; Antisense; GGTGCTATACACACTCAAAACGAAG
>probe:Drosophila_2:1628759_a_at:150:565; Interrogation_Position=6759; Antisense; GGAATCTTTAGGGATTGGCTGCAAT
>probe:Drosophila_2:1628759_a_at:297:529; Interrogation_Position=6769; Antisense; GGGATTGGCTGCAATTATGCAATAA
>probe:Drosophila_2:1628759_a_at:49:197; Interrogation_Position=6837; Antisense; AACGGAAAATGTATGCCAGCCAATC
>probe:Drosophila_2:1628759_a_at:52:485; Interrogation_Position=6847; Antisense; GTATGCCAGCCAATCAGCTAATAAA

Paste this into a BLAST search page for me
CGTCGAAGGTTGTGCTCATCAAATAGTGCTCATCAAATACAACGACAGTGACAGTGTACGGAACTTGTTGGGCGTGTTGGGCGTTAAGACCATTTTAATGACCGAGATATCTTTAGCGATTGGACGGATGAGCATAGTACTAACTGAACAGTAACTAGTTTTTACTCACACGTCTACTCACACGTCTTTGTCTTTGGAAGAAGTGATACAAAGGTGCTATACACAGGTGCTATACACACTCAAAACGAAGGGAATCTTTAGGGATTGGCTGCAATGGGATTGGCTGCAATTATGCAATAAAACGGAAAATGTATGCCAGCCAATCGTATGCCAGCCAATCAGCTAATAAA

Full Affymetrix probeset data:

Annotations for 1628759_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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