FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628824_s_at:

>probe:Drosophila_2:1628824_s_at:32:207; Interrogation_Position=5149; Antisense; AAGCGATGACCCTTCAAAAACAGAT
>probe:Drosophila_2:1628824_s_at:217:21; Interrogation_Position=5213; Antisense; ATATTACATAAATCGGGTCAGCGTT
>probe:Drosophila_2:1628824_s_at:699:663; Interrogation_Position=5221; Antisense; TAAATCGGGTCAGCGTTTTATTATT
>probe:Drosophila_2:1628824_s_at:419:673; Interrogation_Position=5260; Antisense; TACCTTGTATTTCCTTGAATCCTCC
>probe:Drosophila_2:1628824_s_at:48:369; Interrogation_Position=5276; Antisense; GAATCCTCCAATATATTATTTGCTA
>probe:Drosophila_2:1628824_s_at:271:493; Interrogation_Position=5339; Antisense; GTAATGTGAGCATAGCCTGTAGAAA
>probe:Drosophila_2:1628824_s_at:103:141; Interrogation_Position=5454; Antisense; ACGTGTATGTTTGTATGCATGGCCT
>probe:Drosophila_2:1628824_s_at:428:53; Interrogation_Position=5468; Antisense; ATGCATGGCCTGTGAGTAATTGAGA
>probe:Drosophila_2:1628824_s_at:685:669; Interrogation_Position=5526; Antisense; TTTACTAGTAGTTAGGCGGCGGGCA
>probe:Drosophila_2:1628824_s_at:245:85; Interrogation_Position=5550; Antisense; AGTGTTTTAGAACTGCTTCATTATT
>probe:Drosophila_2:1628824_s_at:158:59; Interrogation_Position=5580; Antisense; ATGATGTACAATTTAGAGTCTGCGT
>probe:Drosophila_2:1628824_s_at:192:697; Interrogation_Position=5591; Antisense; TTTAGAGTCTGCGTATTTAACAAAT
>probe:Drosophila_2:1628824_s_at:189:19; Interrogation_Position=5614; Antisense; ATTTCATAAGACAACCACCACAACA
>probe:Drosophila_2:1628824_s_at:634:187; Interrogation_Position=5635; Antisense; AACAGAATCAACAGAGCAGCAGCAA

Paste this into a BLAST search page for me
AAGCGATGACCCTTCAAAAACAGATATATTACATAAATCGGGTCAGCGTTTAAATCGGGTCAGCGTTTTATTATTTACCTTGTATTTCCTTGAATCCTCCGAATCCTCCAATATATTATTTGCTAGTAATGTGAGCATAGCCTGTAGAAAACGTGTATGTTTGTATGCATGGCCTATGCATGGCCTGTGAGTAATTGAGATTTACTAGTAGTTAGGCGGCGGGCAAGTGTTTTAGAACTGCTTCATTATTATGATGTACAATTTAGAGTCTGCGTTTTAGAGTCTGCGTATTTAACAAATATTTCATAAGACAACCACCACAACAAACAGAATCAACAGAGCAGCAGCAA

Full Affymetrix probeset data:

Annotations for 1628824_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720