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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628827_s_at:

>probe:Drosophila_2:1628827_s_at:78:601; Interrogation_Position=4697; Antisense; TGTATTTCCGTTTTGCTATTTTGCC
>probe:Drosophila_2:1628827_s_at:354:691; Interrogation_Position=4716; Antisense; TTTGCCGACCGGAGTGGTTGGCCAA
>probe:Drosophila_2:1628827_s_at:529:579; Interrogation_Position=4735; Antisense; GGCCAACCAGTAATGATGTCTCTTT
>probe:Drosophila_2:1628827_s_at:426:365; Interrogation_Position=4776; Antisense; GAATCGGCACCCATACGTGAACATT
>probe:Drosophila_2:1628827_s_at:535:385; Interrogation_Position=4794; Antisense; GAACATTTTTGGGAATCCGCACTCC
>probe:Drosophila_2:1628827_s_at:281:633; Interrogation_Position=4809; Antisense; TCCGCACTCCCTGGTATTATTTAAT
>probe:Drosophila_2:1628827_s_at:366:691; Interrogation_Position=4863; Antisense; TTTGCACTTGCATTTTGAGGTCGAC
>probe:Drosophila_2:1628827_s_at:489:607; Interrogation_Position=4878; Antisense; TGAGGTCGACTTCTGCGGCAAAAAT
>probe:Drosophila_2:1628827_s_at:283:239; Interrogation_Position=4900; Antisense; AATCACATTGCCCTGAACGGAAATA
>probe:Drosophila_2:1628827_s_at:46:269; Interrogation_Position=5006; Antisense; CAGGCCCTTGTTGGGTGGAAGCTTT
>probe:Drosophila_2:1628827_s_at:233:509; Interrogation_Position=5080; Antisense; GTGACATGGAAAGCCCTCGCGGTTG
>probe:Drosophila_2:1628827_s_at:621:519; Interrogation_Position=5113; Antisense; GTGGAGTATCTTCCAGAGCTGGCCA
>probe:Drosophila_2:1628827_s_at:241:69; Interrogation_Position=5173; Antisense; ATGGCTGAGCCTTCTGCTGGAAGAA
>probe:Drosophila_2:1628827_s_at:53:223; Interrogation_Position=5212; Antisense; AAGGGCTGTTTGGTCAACGTGGAAT

Paste this into a BLAST search page for me
TGTATTTCCGTTTTGCTATTTTGCCTTTGCCGACCGGAGTGGTTGGCCAAGGCCAACCAGTAATGATGTCTCTTTGAATCGGCACCCATACGTGAACATTGAACATTTTTGGGAATCCGCACTCCTCCGCACTCCCTGGTATTATTTAATTTTGCACTTGCATTTTGAGGTCGACTGAGGTCGACTTCTGCGGCAAAAATAATCACATTGCCCTGAACGGAAATACAGGCCCTTGTTGGGTGGAAGCTTTGTGACATGGAAAGCCCTCGCGGTTGGTGGAGTATCTTCCAGAGCTGGCCAATGGCTGAGCCTTCTGCTGGAAGAAAAGGGCTGTTTGGTCAACGTGGAAT

Full Affymetrix probeset data:

Annotations for 1628827_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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