FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628873_s_at:

>probe:Drosophila_2:1628873_s_at:57:131; Interrogation_Position=3645; Antisense; ACCTTCACTCAATTTTGCCAGCTAA
>probe:Drosophila_2:1628873_s_at:509:693; Interrogation_Position=3658; Antisense; TTTGCCAGCTAATGGAGCGCCTGTA
>probe:Drosophila_2:1628873_s_at:536:383; Interrogation_Position=3698; Antisense; GAACATGTTCGGCAGCTTTACGACA
>probe:Drosophila_2:1628873_s_at:406:585; Interrogation_Position=3761; Antisense; TGGATTTTGGGTCTCATTCTGGAAC
>probe:Drosophila_2:1628873_s_at:586:187; Interrogation_Position=3808; Antisense; AACAGTCTCGAGTGCTAGTCTTGAT
>probe:Drosophila_2:1628873_s_at:103:725; Interrogation_Position=3828; Antisense; TTGATGAGCTACGTCGGACCGCTTT
>probe:Drosophila_2:1628873_s_at:243:555; Interrogation_Position=3843; Antisense; GGACCGCTTTTCTTTGGGTTGATCA
>probe:Drosophila_2:1628873_s_at:162:113; Interrogation_Position=3867; Antisense; AGCACTGTTCCCTTATTGATCTTCG
>probe:Drosophila_2:1628873_s_at:498:725; Interrogation_Position=3882; Antisense; TTGATCTTCGTCCAGCTGTTACAAA
>probe:Drosophila_2:1628873_s_at:260:671; Interrogation_Position=3931; Antisense; TACGGATATTGTTTCGGAGCCACCA
>probe:Drosophila_2:1628873_s_at:218:311; Interrogation_Position=3977; Antisense; GCCAAAGCCCTCCAGAATTCAAGTG
>probe:Drosophila_2:1628873_s_at:376:221; Interrogation_Position=3997; Antisense; AAGTGGCCAGCATCCAAATCTGCAT
>probe:Drosophila_2:1628873_s_at:324:161; Interrogation_Position=4012; Antisense; AAATCTGCATGGACCCTAACCGTTG
>probe:Drosophila_2:1628873_s_at:70:203; Interrogation_Position=4029; Antisense; AACCGTTGATGCTGATGTCCTTGAT

Paste this into a BLAST search page for me
ACCTTCACTCAATTTTGCCAGCTAATTTGCCAGCTAATGGAGCGCCTGTAGAACATGTTCGGCAGCTTTACGACATGGATTTTGGGTCTCATTCTGGAACAACAGTCTCGAGTGCTAGTCTTGATTTGATGAGCTACGTCGGACCGCTTTGGACCGCTTTTCTTTGGGTTGATCAAGCACTGTTCCCTTATTGATCTTCGTTGATCTTCGTCCAGCTGTTACAAATACGGATATTGTTTCGGAGCCACCAGCCAAAGCCCTCCAGAATTCAAGTGAAGTGGCCAGCATCCAAATCTGCATAAATCTGCATGGACCCTAACCGTTGAACCGTTGATGCTGATGTCCTTGAT

Full Affymetrix probeset data:

Annotations for 1628873_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720