FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628894_a_at:

>probe:Drosophila_2:1628894_a_at:365:527; Interrogation_Position=3011; Antisense; GGGAACGGGAGCACACACCTCTGGT
>probe:Drosophila_2:1628894_a_at:669:517; Interrogation_Position=3100; Antisense; GTGGGCGGACCAATGTCCCTGACTA
>probe:Drosophila_2:1628894_a_at:525:331; Interrogation_Position=3223; Antisense; GCGGCTGCCGCTTTTGGAAGCCACA
>probe:Drosophila_2:1628894_a_at:361:561; Interrogation_Position=3238; Antisense; GGAAGCCACATCTTTGGCAACTTTG
>probe:Drosophila_2:1628894_a_at:70:585; Interrogation_Position=3252; Antisense; TGGCAACTTTGGAGGTGGCAGCAAT
>probe:Drosophila_2:1628894_a_at:244:117; Interrogation_Position=3280; Antisense; AGCGATAGATACTGGGCGCCCTCGG
>probe:Drosophila_2:1628894_a_at:396:639; Interrogation_Position=3301; Antisense; TCGGGATTGCACGTGTCGGCCATAT
>probe:Drosophila_2:1628894_a_at:163:501; Interrogation_Position=3315; Antisense; GTCGGCCATATCGATGATGACCGTC
>probe:Drosophila_2:1628894_a_at:193:55; Interrogation_Position=3331; Antisense; ATGACCGTCATCATTAGCGGGTGGT
>probe:Drosophila_2:1628894_a_at:488:643; Interrogation_Position=3341; Antisense; TCATTAGCGGGTGGTCGGCGACCAA
>probe:Drosophila_2:1628894_a_at:713:541; Interrogation_Position=3374; Antisense; GGATTCCCTCCATGGGACGGGTGCA
>probe:Drosophila_2:1628894_a_at:132:425; Interrogation_Position=3409; Antisense; GAGACTGCTCTCTTAATGTTTCCGC
>probe:Drosophila_2:1628894_a_at:100:711; Interrogation_Position=3421; Antisense; TTAATGTTTCCGCTGGCGCACACGA
>probe:Drosophila_2:1628894_a_at:124:333; Interrogation_Position=3451; Antisense; GCTGACCGGAAGTGCGCCAATGGAA

Paste this into a BLAST search page for me
GGGAACGGGAGCACACACCTCTGGTGTGGGCGGACCAATGTCCCTGACTAGCGGCTGCCGCTTTTGGAAGCCACAGGAAGCCACATCTTTGGCAACTTTGTGGCAACTTTGGAGGTGGCAGCAATAGCGATAGATACTGGGCGCCCTCGGTCGGGATTGCACGTGTCGGCCATATGTCGGCCATATCGATGATGACCGTCATGACCGTCATCATTAGCGGGTGGTTCATTAGCGGGTGGTCGGCGACCAAGGATTCCCTCCATGGGACGGGTGCAGAGACTGCTCTCTTAATGTTTCCGCTTAATGTTTCCGCTGGCGCACACGAGCTGACCGGAAGTGCGCCAATGGAA

Full Affymetrix probeset data:

Annotations for 1628894_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720