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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628908_at:

>probe:Drosophila_2:1628908_at:366:321; Interrogation_Position=1866; Antisense; GCGCACTTTGGACACTTACTACGAG
>probe:Drosophila_2:1628908_at:384:47; Interrogation_Position=1893; Antisense; ATCCAATCCGGAGTTTACGCATCTG
>probe:Drosophila_2:1628908_at:146:671; Interrogation_Position=1908; Antisense; TACGCATCTGCGAGCTAAGGCCAAG
>probe:Drosophila_2:1628908_at:126:57; Interrogation_Position=1952; Antisense; ATGACCTGGCGGAAATTGTCCAACT
>probe:Drosophila_2:1628908_at:61:385; Interrogation_Position=2058; Antisense; GAACTCCTACAGTCAGTACGATGCC
>probe:Drosophila_2:1628908_at:249:445; Interrogation_Position=2124; Antisense; GATGACCTTCTATGATGCGGCGATC
>probe:Drosophila_2:1628908_at:19:53; Interrogation_Position=2138; Antisense; ATGCGGCGATCCTGTCGGTGCAGAA
>probe:Drosophila_2:1628908_at:557:601; Interrogation_Position=2198; Antisense; TGATCCGTATAAAAGCCGCTAACAT
>probe:Drosophila_2:1628908_at:448:339; Interrogation_Position=2215; Antisense; GCTAACATTCTGTACGAGCTCTCCA
>probe:Drosophila_2:1628908_at:598:417; Interrogation_Position=2230; Antisense; GAGCTCTCCACCATGAAGTTCATTG
>probe:Drosophila_2:1628908_at:581:371; Interrogation_Position=2244; Antisense; GAAGTTCATTGATCCCAAGCTGGGC
>probe:Drosophila_2:1628908_at:380:325; Interrogation_Position=2267; Antisense; GCGAAGCGACTGTCCTGGAGAGCAT
>probe:Drosophila_2:1628908_at:565:395; Interrogation_Position=2305; Antisense; GACAATATCCTTTCAACTTTCCGGG
>probe:Drosophila_2:1628908_at:142:221; Interrogation_Position=2418; Antisense; AAGTGCATCATCTGCCATAGAAATG

Paste this into a BLAST search page for me
GCGCACTTTGGACACTTACTACGAGATCCAATCCGGAGTTTACGCATCTGTACGCATCTGCGAGCTAAGGCCAAGATGACCTGGCGGAAATTGTCCAACTGAACTCCTACAGTCAGTACGATGCCGATGACCTTCTATGATGCGGCGATCATGCGGCGATCCTGTCGGTGCAGAATGATCCGTATAAAAGCCGCTAACATGCTAACATTCTGTACGAGCTCTCCAGAGCTCTCCACCATGAAGTTCATTGGAAGTTCATTGATCCCAAGCTGGGCGCGAAGCGACTGTCCTGGAGAGCATGACAATATCCTTTCAACTTTCCGGGAAGTGCATCATCTGCCATAGAAATG

Full Affymetrix probeset data:

Annotations for 1628908_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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