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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628909_at:

>probe:Drosophila_2:1628909_at:315:619; Interrogation_Position=128; Antisense; TGCTCGCCGGAGTTTTTCTTCAAAG
>probe:Drosophila_2:1628909_at:686:669; Interrogation_Position=142; Antisense; TTTCTTCAAAGTCAGGCGGGTCTCT
>probe:Drosophila_2:1628909_at:109:331; Interrogation_Position=157; Antisense; GCGGGTCTCTTCGATTGCGAGGACA
>probe:Drosophila_2:1628909_at:33:723; Interrogation_Position=171; Antisense; TTGCGAGGACAAGATACCCGGACTT
>probe:Drosophila_2:1628909_at:691:671; Interrogation_Position=185; Antisense; TACCCGGACTTGGAGATGTGAGCGA
>probe:Drosophila_2:1628909_at:55:139; Interrogation_Position=251; Antisense; ACGAGGTGCGCGACTTCTTCAAGAA
>probe:Drosophila_2:1628909_at:78:225; Interrogation_Position=325; Antisense; AAGGACTTGGGCACGGAACTCAAAG
>probe:Drosophila_2:1628909_at:244:251; Interrogation_Position=378; Antisense; CAAGGTCCTGGGTAGCGATCTCAAG
>probe:Drosophila_2:1628909_at:644:451; Interrogation_Position=394; Antisense; GATCTCAAGGATCGCTTCGATGACT
>probe:Drosophila_2:1628909_at:649:341; Interrogation_Position=470; Antisense; GCTTTCTGGCCAACGTGGAGATTAT
>probe:Drosophila_2:1628909_at:466:703; Interrogation_Position=491; Antisense; TTATCAATCCGGACATCCTCAAGGG
>probe:Drosophila_2:1628909_at:182:399; Interrogation_Position=536; Antisense; GACACATTCTGGATGCCTTGGGCAA
>probe:Drosophila_2:1628909_at:517:447; Interrogation_Position=547; Antisense; GATGCCTTGGGCAACTGCAGCAAAT
>probe:Drosophila_2:1628909_at:231:27; Interrogation_Position=98; Antisense; ATAGCTTGCAAGGATCGCTGGTCCT

Paste this into a BLAST search page for me
TGCTCGCCGGAGTTTTTCTTCAAAGTTTCTTCAAAGTCAGGCGGGTCTCTGCGGGTCTCTTCGATTGCGAGGACATTGCGAGGACAAGATACCCGGACTTTACCCGGACTTGGAGATGTGAGCGAACGAGGTGCGCGACTTCTTCAAGAAAAGGACTTGGGCACGGAACTCAAAGCAAGGTCCTGGGTAGCGATCTCAAGGATCTCAAGGATCGCTTCGATGACTGCTTTCTGGCCAACGTGGAGATTATTTATCAATCCGGACATCCTCAAGGGGACACATTCTGGATGCCTTGGGCAAGATGCCTTGGGCAACTGCAGCAAATATAGCTTGCAAGGATCGCTGGTCCT

Full Affymetrix probeset data:

Annotations for 1628909_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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