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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628929_s_at:

>probe:Drosophila_2:1628929_s_at:108:399; Interrogation_Position=1136; Antisense; GACACTACAGCGCTAAAGCGATCTT
>probe:Drosophila_2:1628929_s_at:89:207; Interrogation_Position=1151; Antisense; AAGCGATCTTTGGTCATAGCAGAAC
>probe:Drosophila_2:1628929_s_at:106:21; Interrogation_Position=1236; Antisense; ATATTATAGACGACAAGTGCACACT
>probe:Drosophila_2:1628929_s_at:411:245; Interrogation_Position=1328; Antisense; AATTTATTGCTGTCCTTATCCACGC
>probe:Drosophila_2:1628929_s_at:113:627; Interrogation_Position=1346; Antisense; TCCACGCACATACTTATACACATTC
>probe:Drosophila_2:1628929_s_at:554:685; Interrogation_Position=1360; Antisense; TATACACATTCTAACGTCCGGTCGA
>probe:Drosophila_2:1628929_s_at:433:137; Interrogation_Position=1373; Antisense; ACGTCCGGTCGAACGATTCATTCTA
>probe:Drosophila_2:1628929_s_at:645:293; Interrogation_Position=1386; Antisense; CGATTCATTCTACCATGATCCCATA
>probe:Drosophila_2:1628929_s_at:719:449; Interrogation_Position=1402; Antisense; GATCCCATAATGCATTTTCATGATG
>probe:Drosophila_2:1628929_s_at:162:395; Interrogation_Position=1426; Antisense; GAAATCTTCAACGTCTTCTACTTGC
>probe:Drosophila_2:1628929_s_at:30:275; Interrogation_Position=1446; Antisense; CTTGCGTGCTAAGTTGTTGTTGGCT
>probe:Drosophila_2:1628929_s_at:272:467; Interrogation_Position=1464; Antisense; GTTGGCTTTGATTTTATCGCATACT
>probe:Drosophila_2:1628929_s_at:214:511; Interrogation_Position=1649; Antisense; GTGACAATGTACTGTAGACCCCATG
>probe:Drosophila_2:1628929_s_at:40:105; Interrogation_Position=1664; Antisense; AGACCCCATGTTGAGTGCGTTAATA

Paste this into a BLAST search page for me
GACACTACAGCGCTAAAGCGATCTTAAGCGATCTTTGGTCATAGCAGAACATATTATAGACGACAAGTGCACACTAATTTATTGCTGTCCTTATCCACGCTCCACGCACATACTTATACACATTCTATACACATTCTAACGTCCGGTCGAACGTCCGGTCGAACGATTCATTCTACGATTCATTCTACCATGATCCCATAGATCCCATAATGCATTTTCATGATGGAAATCTTCAACGTCTTCTACTTGCCTTGCGTGCTAAGTTGTTGTTGGCTGTTGGCTTTGATTTTATCGCATACTGTGACAATGTACTGTAGACCCCATGAGACCCCATGTTGAGTGCGTTAATA

Full Affymetrix probeset data:

Annotations for 1628929_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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