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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629055_a_at:

>probe:Drosophila_2:1629055_a_at:499:337; Interrogation_Position=1013; Antisense; GCTCGCGTGATGTCCCAAGTTAAGA
>probe:Drosophila_2:1629055_a_at:348:659; Interrogation_Position=1033; Antisense; TAAGATCCTGATCCGTGGTCTGTAC
>probe:Drosophila_2:1629055_a_at:535:61; Interrogation_Position=1137; Antisense; ATGTGAAGCTGATGGCCGACCGCAT
>probe:Drosophila_2:1629055_a_at:306:507; Interrogation_Position=1169; Antisense; GTGCGCACCAAGCTCAAGGACAATC
>probe:Drosophila_2:1629055_a_at:360:383; Interrogation_Position=1216; Antisense; GAACTGGGACCACATTGTCAACCAA
>probe:Drosophila_2:1629055_a_at:182:165; Interrogation_Position=1239; Antisense; AAATCGGCATGTTCTGCTTCACGGG
>probe:Drosophila_2:1629055_a_at:272:33; Interrogation_Position=1292; Antisense; ATCAAGGATCACAGCGTCTATCTCA
>probe:Drosophila_2:1629055_a_at:471:497; Interrogation_Position=1307; Antisense; GTCTATCTCACCAACGATGGACGTG
>probe:Drosophila_2:1629055_a_at:617:693; Interrogation_Position=1332; Antisense; TTTCGATGGCGGGAGTCACCAGCAA
>probe:Drosophila_2:1629055_a_at:50:211; Interrogation_Position=1355; Antisense; AAGAATGTCGAGTACCTGGCTGAGA
>probe:Drosophila_2:1629055_a_at:490:483; Interrogation_Position=1441; Antisense; GTAGTACCTTCTAATCGGCACTTGT
>probe:Drosophila_2:1629055_a_at:271:487; Interrogation_Position=1464; Antisense; GTACGAATTTTCTAGCACCAACGAA
>probe:Drosophila_2:1629055_a_at:581:311; Interrogation_Position=1507; Antisense; GCCAATGCATTTTGCACACTCTCTA
>probe:Drosophila_2:1629055_a_at:320:259; Interrogation_Position=1523; Antisense; CACTCTCTATCCATATCTCTGTATA

Paste this into a BLAST search page for me
GCTCGCGTGATGTCCCAAGTTAAGATAAGATCCTGATCCGTGGTCTGTACATGTGAAGCTGATGGCCGACCGCATGTGCGCACCAAGCTCAAGGACAATCGAACTGGGACCACATTGTCAACCAAAAATCGGCATGTTCTGCTTCACGGGATCAAGGATCACAGCGTCTATCTCAGTCTATCTCACCAACGATGGACGTGTTTCGATGGCGGGAGTCACCAGCAAAAGAATGTCGAGTACCTGGCTGAGAGTAGTACCTTCTAATCGGCACTTGTGTACGAATTTTCTAGCACCAACGAAGCCAATGCATTTTGCACACTCTCTACACTCTCTATCCATATCTCTGTATA

Full Affymetrix probeset data:

Annotations for 1629055_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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