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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629191_s_at:

>probe:Drosophila_2:1629191_s_at:255:157; Interrogation_Position=1058; Antisense; ACACCTTGGGCGGACTGCTGCAAAG
>probe:Drosophila_2:1629191_s_at:698:677; Interrogation_Position=1110; Antisense; TAGGCGGTCTTTCGCAGTTCGGCAA
>probe:Drosophila_2:1629191_s_at:626:25; Interrogation_Position=1169; Antisense; ATAGTGGATCTGTCTCACGTCTCGG
>probe:Drosophila_2:1629191_s_at:394:433; Interrogation_Position=1225; Antisense; GAGGGCGCCGTTAATATTCTCGCAC
>probe:Drosophila_2:1629191_s_at:338:453; Interrogation_Position=1292; Antisense; GATCATGTCCTGCAACGCATTGCAA
>probe:Drosophila_2:1629191_s_at:668:681; Interrogation_Position=1333; Antisense; TATGGTGGCCTTTTATCCGCATTTC
>probe:Drosophila_2:1629191_s_at:164:345; Interrogation_Position=1351; Antisense; GCATTTCGTCAGCTGCTCGGGACAG
>probe:Drosophila_2:1629191_s_at:359:281; Interrogation_Position=1366; Antisense; CTCGGGACAGGCGACATTGCACGAT
>probe:Drosophila_2:1629191_s_at:213:723; Interrogation_Position=1382; Antisense; TTGCACGATGTTGTGGCGCATATCA
>probe:Drosophila_2:1629191_s_at:530:581; Interrogation_Position=1422; Antisense; TGGCCGGCATCGATCATGTTGGCAT
>probe:Drosophila_2:1629191_s_at:64:59; Interrogation_Position=1437; Antisense; ATGTTGGCATTGGAGCTGGCTACGA
>probe:Drosophila_2:1629191_s_at:110:137; Interrogation_Position=1458; Antisense; ACGACGGAGTCAACTTAGTGCCCAA
>probe:Drosophila_2:1629191_s_at:607:625; Interrogation_Position=1522; Antisense; TGCCCTGCTCGAGTCTGATAAATGG
>probe:Drosophila_2:1629191_s_at:47:501; Interrogation_Position=1604; Antisense; GTCGAAGCGGATGCTCAGATACTCT

Paste this into a BLAST search page for me
ACACCTTGGGCGGACTGCTGCAAAGTAGGCGGTCTTTCGCAGTTCGGCAAATAGTGGATCTGTCTCACGTCTCGGGAGGGCGCCGTTAATATTCTCGCACGATCATGTCCTGCAACGCATTGCAATATGGTGGCCTTTTATCCGCATTTCGCATTTCGTCAGCTGCTCGGGACAGCTCGGGACAGGCGACATTGCACGATTTGCACGATGTTGTGGCGCATATCATGGCCGGCATCGATCATGTTGGCATATGTTGGCATTGGAGCTGGCTACGAACGACGGAGTCAACTTAGTGCCCAATGCCCTGCTCGAGTCTGATAAATGGGTCGAAGCGGATGCTCAGATACTCT

Full Affymetrix probeset data:

Annotations for 1629191_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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