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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629326_s_at:

>probe:Drosophila_2:1629326_s_at:572:441; Interrogation_Position=1342; Antisense; GATGGGTTTCATTATGATTTCCGGT
>probe:Drosophila_2:1629326_s_at:210:603; Interrogation_Position=1356; Antisense; TGATTTCCGGTGACATTACTTCTGC
>probe:Drosophila_2:1629326_s_at:269:291; Interrogation_Position=1363; Antisense; CGGTGACATTACTTCTGCTGACTAG
>probe:Drosophila_2:1629326_s_at:644:275; Interrogation_Position=1374; Antisense; CTTCTGCTGACTAGTAAATGTATGA
>probe:Drosophila_2:1629326_s_at:71:593; Interrogation_Position=1406; Antisense; TGGGAAATCAACGTTACTGTTACAA
>probe:Drosophila_2:1629326_s_at:458:1; Interrogation_Position=1470; Antisense; ATTGTTGTAATTTCCCACCTACTTG
>probe:Drosophila_2:1629326_s_at:129:601; Interrogation_Position=1475; Antisense; TGTAATTTCCCACCTACTTGAAACA
>probe:Drosophila_2:1629326_s_at:466:159; Interrogation_Position=1508; Antisense; ACAAGCATAAGCGAACCCATCAATT
>probe:Drosophila_2:1629326_s_at:600:401; Interrogation_Position=1564; Antisense; GACATTAAACATTTTGGTGCCAGTA
>probe:Drosophila_2:1629326_s_at:405:703; Interrogation_Position=1619; Antisense; TTATAACTACAGCTCAATGACCTTA
>probe:Drosophila_2:1629326_s_at:516:209; Interrogation_Position=1633; Antisense; CAATGACCTTAAGCAACCCTAAAAT
>probe:Drosophila_2:1629326_s_at:366:245; Interrogation_Position=1695; Antisense; AATTAGCCCAATTTACTTTGATTAT
>probe:Drosophila_2:1629326_s_at:430:85; Interrogation_Position=1787; Antisense; AGTGTTGTTCTCGTATTGACCTTTT
>probe:Drosophila_2:1629326_s_at:140:641; Interrogation_Position=1795; Antisense; TCTCGTATTGACCTTTTGTTTGTTT

Paste this into a BLAST search page for me
GATGGGTTTCATTATGATTTCCGGTTGATTTCCGGTGACATTACTTCTGCCGGTGACATTACTTCTGCTGACTAGCTTCTGCTGACTAGTAAATGTATGATGGGAAATCAACGTTACTGTTACAAATTGTTGTAATTTCCCACCTACTTGTGTAATTTCCCACCTACTTGAAACAACAAGCATAAGCGAACCCATCAATTGACATTAAACATTTTGGTGCCAGTATTATAACTACAGCTCAATGACCTTACAATGACCTTAAGCAACCCTAAAATAATTAGCCCAATTTACTTTGATTATAGTGTTGTTCTCGTATTGACCTTTTTCTCGTATTGACCTTTTGTTTGTTT

Full Affymetrix probeset data:

Annotations for 1629326_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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