FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629357_s_at:

>probe:Drosophila_2:1629357_s_at:629:497; Interrogation_Position=2171; Antisense; GTCTGGCCTTAACCACATGACTAAG
>probe:Drosophila_2:1629357_s_at:376:145; Interrogation_Position=2190; Antisense; ACTAAGTTCTTGCATTCGTCCCAAA
>probe:Drosophila_2:1629357_s_at:11:227; Interrogation_Position=2283; Antisense; AATGGCCTGCTACTAGACGACGAAC
>probe:Drosophila_2:1629357_s_at:535:387; Interrogation_Position=2304; Antisense; GAACAAGAGCTTGGGACTCCGACTC
>probe:Drosophila_2:1629357_s_at:621:713; Interrogation_Position=2335; Antisense; TTCTTTGTGCGGCTGTGTAATCCAC
>probe:Drosophila_2:1629357_s_at:288:59; Interrogation_Position=2365; Antisense; ATGTTATTGAACTCGGACACCGCCA
>probe:Drosophila_2:1629357_s_at:87:465; Interrogation_Position=2413; Antisense; GTTACCCGCTTTGCCGTATCGATTT
>probe:Drosophila_2:1629357_s_at:484:691; Interrogation_Position=2436; Antisense; TTCCGCTTCCGGTTAGTCTAAGTCT
>probe:Drosophila_2:1629357_s_at:320:677; Interrogation_Position=2449; Antisense; TAGTCTAAGTCTGTAGGTTCCGCCC
>probe:Drosophila_2:1629357_s_at:151:717; Interrogation_Position=2485; Antisense; TTCGATCCGTTTCTGTTCTGTTCTG
>probe:Drosophila_2:1629357_s_at:152:473; Interrogation_Position=2499; Antisense; GTTCTGTTCTGTTTCTATTTCGATT
>probe:Drosophila_2:1629357_s_at:372:465; Interrogation_Position=2539; Antisense; GTTGAGTTATTATCCAAACCGCATG
>probe:Drosophila_2:1629357_s_at:421:175; Interrogation_Position=2554; Antisense; AAACCGCATGTGCACGTGGATGTAT
>probe:Drosophila_2:1629357_s_at:458:245; Interrogation_Position=2596; Antisense; AATTGTAATTGGAACCTCGTCTGGG

Paste this into a BLAST search page for me
GTCTGGCCTTAACCACATGACTAAGACTAAGTTCTTGCATTCGTCCCAAAAATGGCCTGCTACTAGACGACGAACGAACAAGAGCTTGGGACTCCGACTCTTCTTTGTGCGGCTGTGTAATCCACATGTTATTGAACTCGGACACCGCCAGTTACCCGCTTTGCCGTATCGATTTTTCCGCTTCCGGTTAGTCTAAGTCTTAGTCTAAGTCTGTAGGTTCCGCCCTTCGATCCGTTTCTGTTCTGTTCTGGTTCTGTTCTGTTTCTATTTCGATTGTTGAGTTATTATCCAAACCGCATGAAACCGCATGTGCACGTGGATGTATAATTGTAATTGGAACCTCGTCTGGG

Full Affymetrix probeset data:

Annotations for 1629357_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720