FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629374_at:

>probe:Drosophila_2:1629374_at:640:407; Interrogation_Position=3319; Antisense; GACGATCCCGATCAAGAACGTGCTC
>probe:Drosophila_2:1629374_at:372:673; Interrogation_Position=3366; Antisense; TAGCGAATCCGAGCAGCCGCAAATT
>probe:Drosophila_2:1629374_at:443:1; Interrogation_Position=3398; Antisense; ATATTAAGCAGGAGCCCGAAGGTCT
>probe:Drosophila_2:1629374_at:29:57; Interrogation_Position=3425; Antisense; ATGAGGATTTTGCTCCTGAATCCCC
>probe:Drosophila_2:1629374_at:254:491; Interrogation_Position=3466; Antisense; GTAAAAGCTGATCCCGATGAACCCT
>probe:Drosophila_2:1629374_at:245:667; Interrogation_Position=3522; Antisense; TACGCCGGCCAGAGCAAGAAGGACT
>probe:Drosophila_2:1629374_at:373:677; Interrogation_Position=3562; Antisense; TAGAGCGGCGACTTAGTAACATTAC
>probe:Drosophila_2:1629374_at:223:707; Interrogation_Position=3605; Antisense; TTACGTGTAAGCTCTGTGGTCAGGA
>probe:Drosophila_2:1629374_at:41:261; Interrogation_Position=3675; Antisense; CACGACATTCGGGTCGGGTCAATTA
>probe:Drosophila_2:1629374_at:400:529; Interrogation_Position=3690; Antisense; GGGTCAATTAACTAACGAATCCCAT
>probe:Drosophila_2:1629374_at:622:367; Interrogation_Position=3706; Antisense; GAATCCCATTTTATACACACAGTTG
>probe:Drosophila_2:1629374_at:366:133; Interrogation_Position=3755; Antisense; ACCCACCATGGATCTTCACAACGGA
>probe:Drosophila_2:1629374_at:264:667; Interrogation_Position=3786; Antisense; TACACGAATACATCTTGAGCCGGAA
>probe:Drosophila_2:1629374_at:594:415; Interrogation_Position=3802; Antisense; GAGCCGGAAGTCCACATTCTTAAAA

Paste this into a BLAST search page for me
GACGATCCCGATCAAGAACGTGCTCTAGCGAATCCGAGCAGCCGCAAATTATATTAAGCAGGAGCCCGAAGGTCTATGAGGATTTTGCTCCTGAATCCCCGTAAAAGCTGATCCCGATGAACCCTTACGCCGGCCAGAGCAAGAAGGACTTAGAGCGGCGACTTAGTAACATTACTTACGTGTAAGCTCTGTGGTCAGGACACGACATTCGGGTCGGGTCAATTAGGGTCAATTAACTAACGAATCCCATGAATCCCATTTTATACACACAGTTGACCCACCATGGATCTTCACAACGGATACACGAATACATCTTGAGCCGGAAGAGCCGGAAGTCCACATTCTTAAAA

Full Affymetrix probeset data:

Annotations for 1629374_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720