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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629387_s_at:

>probe:Drosophila_2:1629387_s_at:535:587; Interrogation_Position=2442; Antisense; TGGAGATCCTTGATGATACCCGAAA
>probe:Drosophila_2:1629387_s_at:498:441; Interrogation_Position=2549; Antisense; GATGGAGCCCAGTTCTACGGGCAAC
>probe:Drosophila_2:1629387_s_at:490:75; Interrogation_Position=2599; Antisense; AGGTCCGGGCAACAAATCGCGATCA
>probe:Drosophila_2:1629387_s_at:199:455; Interrogation_Position=2627; Antisense; GATAATCCCGGCATGGAACAGCGAT
>probe:Drosophila_2:1629387_s_at:11:625; Interrogation_Position=2673; Antisense; TGCGCAGCAAGCATCTGGGCAAGAA
>probe:Drosophila_2:1629387_s_at:134:429; Interrogation_Position=2702; Antisense; GAGTTCCGCTACTTCTAGGATCGAG
>probe:Drosophila_2:1629387_s_at:565:425; Interrogation_Position=2781; Antisense; GAGAGACAGACATCAGCAGTTCCGT
>probe:Drosophila_2:1629387_s_at:461:93; Interrogation_Position=2798; Antisense; AGTTCCGTCTAGGATGCTAGTCCTG
>probe:Drosophila_2:1629387_s_at:459:677; Interrogation_Position=2815; Antisense; TAGTCCTGGTCACTAGCGATCGGAT
>probe:Drosophila_2:1629387_s_at:281:447; Interrogation_Position=2832; Antisense; GATCGGATTGGCTCCAATACCTTGC
>probe:Drosophila_2:1629387_s_at:362:501; Interrogation_Position=2871; Antisense; GTGTGCAAACCAGAACTAACCTTAA
>probe:Drosophila_2:1629387_s_at:228:101; Interrogation_Position=2895; Antisense; AGACTAACCTAAGTGGAGCTCCAGA
>probe:Drosophila_2:1629387_s_at:646:571; Interrogation_Position=2942; Antisense; GGCTCCTGCTGAGGCGGATGCTTAA
>probe:Drosophila_2:1629387_s_at:564:119; Interrogation_Position=2966; Antisense; AGCTGATGCTCATCCAGGCGAAAAG

Paste this into a BLAST search page for me
TGGAGATCCTTGATGATACCCGAAAGATGGAGCCCAGTTCTACGGGCAACAGGTCCGGGCAACAAATCGCGATCAGATAATCCCGGCATGGAACAGCGATTGCGCAGCAAGCATCTGGGCAAGAAGAGTTCCGCTACTTCTAGGATCGAGGAGAGACAGACATCAGCAGTTCCGTAGTTCCGTCTAGGATGCTAGTCCTGTAGTCCTGGTCACTAGCGATCGGATGATCGGATTGGCTCCAATACCTTGCGTGTGCAAACCAGAACTAACCTTAAAGACTAACCTAAGTGGAGCTCCAGAGGCTCCTGCTGAGGCGGATGCTTAAAGCTGATGCTCATCCAGGCGAAAAG

Full Affymetrix probeset data:

Annotations for 1629387_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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