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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629506_at:

>probe:Drosophila_2:1629506_at:512:295; Interrogation_Position=1109; Antisense; CGAGATTTCTCAGTGGTTGGTTCCT
>probe:Drosophila_2:1629506_at:245:509; Interrogation_Position=1160; Antisense; GTGCTCGAGCACTATATACCGCGAT
>probe:Drosophila_2:1629506_at:443:21; Interrogation_Position=1175; Antisense; ATACCGCGATTCTTCAAGGGCACTA
>probe:Drosophila_2:1629506_at:500:55; Interrogation_Position=1212; Antisense; ATGAACCCAATATCGGTCTGGCCTT
>probe:Drosophila_2:1629506_at:110:365; Interrogation_Position=1246; Antisense; GAATATCAACCCCTGGAAGCCGAAA
>probe:Drosophila_2:1629506_at:462:655; Interrogation_Position=1293; Antisense; TAATGCGGGCTAACTTCACTCAGGA
>probe:Drosophila_2:1629506_at:592:209; Interrogation_Position=1340; Antisense; AAGCAGCGCTTGTATCGCCAATACT
>probe:Drosophila_2:1629506_at:690:185; Interrogation_Position=809; Antisense; AACATGATTCGAGACCCCGTAGAAC
>probe:Drosophila_2:1629506_at:658:589; Interrogation_Position=845; Antisense; TGGTTCTACTATAAACGCACTCCCT
>probe:Drosophila_2:1629506_at:372:259; Interrogation_Position=862; Antisense; CACTCCCTGGAACTCTGTCAAAATG
>probe:Drosophila_2:1629506_at:670:559; Interrogation_Position=900; Antisense; GGAAATTTCAGAATCGCACCCACTA
>probe:Drosophila_2:1629506_at:236:437; Interrogation_Position=938; Antisense; GAGGAATGCGTCCTTACACACGATC
>probe:Drosophila_2:1629506_at:66:403; Interrogation_Position=977; Antisense; GACTACGGACTTCTGTTCAAGGACG
>probe:Drosophila_2:1629506_at:515:653; Interrogation_Position=993; Antisense; TCAAGGACGATTCTGCCGATCACAA

Paste this into a BLAST search page for me
CGAGATTTCTCAGTGGTTGGTTCCTGTGCTCGAGCACTATATACCGCGATATACCGCGATTCTTCAAGGGCACTAATGAACCCAATATCGGTCTGGCCTTGAATATCAACCCCTGGAAGCCGAAATAATGCGGGCTAACTTCACTCAGGAAAGCAGCGCTTGTATCGCCAATACTAACATGATTCGAGACCCCGTAGAACTGGTTCTACTATAAACGCACTCCCTCACTCCCTGGAACTCTGTCAAAATGGGAAATTTCAGAATCGCACCCACTAGAGGAATGCGTCCTTACACACGATCGACTACGGACTTCTGTTCAAGGACGTCAAGGACGATTCTGCCGATCACAA

Full Affymetrix probeset data:

Annotations for 1629506_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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