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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629608_a_at:

>probe:Drosophila_2:1629608_a_at:239:553; Interrogation_Position=2849; Antisense; GGAGCTGTGCTCAACCGGATCAGGA
>probe:Drosophila_2:1629608_a_at:439:139; Interrogation_Position=2902; Antisense; ACGGGCCACGTGTTTATGCGAACTC
>probe:Drosophila_2:1629608_a_at:381:163; Interrogation_Position=2933; Antisense; AAATTTTCGGCTCTCTCATCCTGGA
>probe:Drosophila_2:1629608_a_at:27:437; Interrogation_Position=2974; Antisense; GAGGATCTGCAAATCTCACGTTCCT
>probe:Drosophila_2:1629608_a_at:474:141; Interrogation_Position=3120; Antisense; ACTGGCCGCCATGGATCAACTGACG
>probe:Drosophila_2:1629608_a_at:561:349; Interrogation_Position=3185; Antisense; GCAGTGCATCATTGGATCGCGACAA
>probe:Drosophila_2:1629608_a_at:330:115; Interrogation_Position=3226; Antisense; AGCAGTCTGGATGCAACCACTCCAA
>probe:Drosophila_2:1629608_a_at:552:291; Interrogation_Position=3254; Antisense; CGTTGGCTGCTGTGGTATGTCCAAT
>probe:Drosophila_2:1629608_a_at:551:231; Interrogation_Position=3276; Antisense; AATGAGAACCAAGTCACCGCCAATG
>probe:Drosophila_2:1629608_a_at:150:229; Interrogation_Position=3297; Antisense; AATGGCAGTGGCTCCAGTGATGCAC
>probe:Drosophila_2:1629608_a_at:182:85; Interrogation_Position=3312; Antisense; AGTGATGCACATGGTACAGGCTAGC
>probe:Drosophila_2:1629608_a_at:122:677; Interrogation_Position=3333; Antisense; TAGCACCAGCAAAGGCGACGGCCAA
>probe:Drosophila_2:1629608_a_at:722:577; Interrogation_Position=3352; Antisense; GGCCAACGACCAGGCTCGAAGGATT
>probe:Drosophila_2:1629608_a_at:691:541; Interrogation_Position=3372; Antisense; GGATTCAGTATCATCCATTTCCCTG

Paste this into a BLAST search page for me
GGAGCTGTGCTCAACCGGATCAGGAACGGGCCACGTGTTTATGCGAACTCAAATTTTCGGCTCTCTCATCCTGGAGAGGATCTGCAAATCTCACGTTCCTACTGGCCGCCATGGATCAACTGACGGCAGTGCATCATTGGATCGCGACAAAGCAGTCTGGATGCAACCACTCCAACGTTGGCTGCTGTGGTATGTCCAATAATGAGAACCAAGTCACCGCCAATGAATGGCAGTGGCTCCAGTGATGCACAGTGATGCACATGGTACAGGCTAGCTAGCACCAGCAAAGGCGACGGCCAAGGCCAACGACCAGGCTCGAAGGATTGGATTCAGTATCATCCATTTCCCTG

Full Affymetrix probeset data:

Annotations for 1629608_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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