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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629674_s_at:

>probe:Drosophila_2:1629674_s_at:443:67; Interrogation_Position=1126; Antisense; ATGGACACAACGACTGCAATCCCAG
>probe:Drosophila_2:1629674_s_at:440:149; Interrogation_Position=1184; Antisense; ACTTCAACACGGATCGTCTGGCGAA
>probe:Drosophila_2:1629674_s_at:723:199; Interrogation_Position=1244; Antisense; AACGCAAGATATTCGATGCCTCCAA
>probe:Drosophila_2:1629674_s_at:107:439; Interrogation_Position=1288; Antisense; GAGGCCGCGGCGTTCAATATGAAGT
>probe:Drosophila_2:1629674_s_at:160:373; Interrogation_Position=1314; Antisense; GAAGGGCAATCGCAACCGTTCAACT
>probe:Drosophila_2:1629674_s_at:392:191; Interrogation_Position=1335; Antisense; AACTTACAGTAGTGCTGCCCAGCAG
>probe:Drosophila_2:1629674_s_at:343:113; Interrogation_Position=1403; Antisense; AGCACGAGGACTTCATTCAGTCGAT
>probe:Drosophila_2:1629674_s_at:650:711; Interrogation_Position=1418; Antisense; TTCAGTCGATTAGAGCGGCCAAGCA
>probe:Drosophila_2:1629674_s_at:562:367; Interrogation_Position=1506; Antisense; GAATCCAGACTATGTCCAGTGTCCC
>probe:Drosophila_2:1629674_s_at:217:141; Interrogation_Position=1532; Antisense; ACTGTGGTCGCCGATTCAACGAACA
>probe:Drosophila_2:1629674_s_at:704:385; Interrogation_Position=1552; Antisense; GAACAGGCTGCGGAGCGTCATATCC
>probe:Drosophila_2:1629674_s_at:600:497; Interrogation_Position=1568; Antisense; GTCATATCCCCAAGTGCGTTAACAT
>probe:Drosophila_2:1629674_s_at:702:661; Interrogation_Position=1587; Antisense; TAACATGGTGCACAACAAGCCCCGT
>probe:Drosophila_2:1629674_s_at:69:689; Interrogation_Position=1657; Antisense; TATTCGCCCATTCTTTTACTTGTGA

Paste this into a BLAST search page for me
ATGGACACAACGACTGCAATCCCAGACTTCAACACGGATCGTCTGGCGAAAACGCAAGATATTCGATGCCTCCAAGAGGCCGCGGCGTTCAATATGAAGTGAAGGGCAATCGCAACCGTTCAACTAACTTACAGTAGTGCTGCCCAGCAGAGCACGAGGACTTCATTCAGTCGATTTCAGTCGATTAGAGCGGCCAAGCAGAATCCAGACTATGTCCAGTGTCCCACTGTGGTCGCCGATTCAACGAACAGAACAGGCTGCGGAGCGTCATATCCGTCATATCCCCAAGTGCGTTAACATTAACATGGTGCACAACAAGCCCCGTTATTCGCCCATTCTTTTACTTGTGA

Full Affymetrix probeset data:

Annotations for 1629674_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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