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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629694_at:

>probe:Drosophila_2:1629694_at:663:617; Interrogation_Position=1129; Antisense; TCCCTAGTAAGGTAAGTTGACAATT
>probe:Drosophila_2:1629694_at:329:527; Interrogation_Position=1139; Antisense; GGTAAGTTGACAATTTCGAACTGAA
>probe:Drosophila_2:1629694_at:512:243; Interrogation_Position=1180; Antisense; AATTTTATATGTGTGGGTTGCGTCC
>probe:Drosophila_2:1629694_at:677:679; Interrogation_Position=1187; Antisense; TATGTGTGGGTTGCGTCCGATTTAT
>probe:Drosophila_2:1629694_at:697:325; Interrogation_Position=1199; Antisense; GCGTCCGATTTATGTCGGTTACATA
>probe:Drosophila_2:1629694_at:526:217; Interrogation_Position=1224; Antisense; AAGTAATCCGATATCTATCTCTTAT
>probe:Drosophila_2:1629694_at:623:303; Interrogation_Position=1231; Antisense; CCGATATCTATCTCTTATATTTTGA
>probe:Drosophila_2:1629694_at:222:173; Interrogation_Position=1281; Antisense; AAACCAATGAGGACGTCTTTTTATG
>probe:Drosophila_2:1629694_at:611:605; Interrogation_Position=1288; Antisense; TGAGGACGTCTTTTTATGTTAAATT
>probe:Drosophila_2:1629694_at:506:649; Interrogation_Position=1313; Antisense; TAAGTTGTTAGAAAATGCCGTTTGT
>probe:Drosophila_2:1629694_at:603:49; Interrogation_Position=1327; Antisense; ATGCCGTTTGTTTTTATGGAGCTAA
>probe:Drosophila_2:1629694_at:480:241; Interrogation_Position=1351; Antisense; AATAGATTTAGTTTGCATAGCTGGT
>probe:Drosophila_2:1629694_at:64:481; Interrogation_Position=1361; Antisense; GTTTGCATAGCTGGTAGATCATTAC
>probe:Drosophila_2:1629694_at:269:569; Interrogation_Position=1368; Antisense; TAGCTGGTAGATCATTACGGGAAAT

Paste this into a BLAST search page for me
TCCCTAGTAAGGTAAGTTGACAATTGGTAAGTTGACAATTTCGAACTGAAAATTTTATATGTGTGGGTTGCGTCCTATGTGTGGGTTGCGTCCGATTTATGCGTCCGATTTATGTCGGTTACATAAAGTAATCCGATATCTATCTCTTATCCGATATCTATCTCTTATATTTTGAAAACCAATGAGGACGTCTTTTTATGTGAGGACGTCTTTTTATGTTAAATTTAAGTTGTTAGAAAATGCCGTTTGTATGCCGTTTGTTTTTATGGAGCTAAAATAGATTTAGTTTGCATAGCTGGTGTTTGCATAGCTGGTAGATCATTACTAGCTGGTAGATCATTACGGGAAAT

Full Affymetrix probeset data:

Annotations for 1629694_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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