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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629696_a_at:

>probe:Drosophila_2:1629696_a_at:523:229; Interrogation_Position=5911; Antisense; AATGTGTAATTCTCTGTTTTTGCAA
>probe:Drosophila_2:1629696_a_at:84:247; Interrogation_Position=5918; Antisense; AATTCTCTGTTTTTGCAATTGCAAC
>probe:Drosophila_2:1629696_a_at:505:65; Interrogation_Position=6036; Antisense; ATGGTCCACAGAGCAAAATGAGTCG
>probe:Drosophila_2:1629696_a_at:669:609; Interrogation_Position=6085; Antisense; TGACGATGGATGATGATTAGCTTAC
>probe:Drosophila_2:1629696_a_at:496:461; Interrogation_Position=6099; Antisense; GATTAGCTTACGATGTTTCCTCTCC
>probe:Drosophila_2:1629696_a_at:535:443; Interrogation_Position=6110; Antisense; GATGTTTCCTCTCCGTGTGCATTCT
>probe:Drosophila_2:1629696_a_at:318:515; Interrogation_Position=6124; Antisense; GTGTGCATTCTTTGATAACTTTGAG
>probe:Drosophila_2:1629696_a_at:104:363; Interrogation_Position=6148; Antisense; GAATTGTCTACCAACTACACACTTT
>probe:Drosophila_2:1629696_a_at:595:57; Interrogation_Position=6179; Antisense; ATGTTAACCTTGAACTTGTGTTTTG
>probe:Drosophila_2:1629696_a_at:451:7; Interrogation_Position=6321; Antisense; ATTCGACAAGGTCCAAAGCCAACGT
>probe:Drosophila_2:1629696_a_at:448:197; Interrogation_Position=6341; Antisense; AACGTATTCCAATTTGCGATCTGCA
>probe:Drosophila_2:1629696_a_at:499:325; Interrogation_Position=6356; Antisense; GCGATCTGCAAAACATTTTACTTAG
>probe:Drosophila_2:1629696_a_at:351:197; Interrogation_Position=6393; Antisense; AACGAGTTAACCTGATACTGAAACT
>probe:Drosophila_2:1629696_a_at:687:391; Interrogation_Position=6424; Antisense; GAAACCGAACTCTAACTGAATCAAA

Paste this into a BLAST search page for me
AATGTGTAATTCTCTGTTTTTGCAAAATTCTCTGTTTTTGCAATTGCAACATGGTCCACAGAGCAAAATGAGTCGTGACGATGGATGATGATTAGCTTACGATTAGCTTACGATGTTTCCTCTCCGATGTTTCCTCTCCGTGTGCATTCTGTGTGCATTCTTTGATAACTTTGAGGAATTGTCTACCAACTACACACTTTATGTTAACCTTGAACTTGTGTTTTGATTCGACAAGGTCCAAAGCCAACGTAACGTATTCCAATTTGCGATCTGCAGCGATCTGCAAAACATTTTACTTAGAACGAGTTAACCTGATACTGAAACTGAAACCGAACTCTAACTGAATCAAA

Full Affymetrix probeset data:

Annotations for 1629696_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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