FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629716_a_at:

>probe:Drosophila_2:1629716_a_at:716:477; Interrogation_Position=1001; Antisense; GTTTCTGGACCCATGGCATTCAGTA
>probe:Drosophila_2:1629716_a_at:656:449; Interrogation_Position=1053; Antisense; GATCCGCACATACTTGGGACACCAA
>probe:Drosophila_2:1629716_a_at:668:525; Interrogation_Position=1068; Antisense; GGGACACCAACTGTTCAAACGACTG
>probe:Drosophila_2:1629716_a_at:373:583; Interrogation_Position=548; Antisense; TGGCGGGCATAGACGTTGGCATTTT
>probe:Drosophila_2:1629716_a_at:344:57; Interrogation_Position=589; Antisense; ATGATGTATGAGCACCCCGAGAGTC
>probe:Drosophila_2:1629716_a_at:300:413; Interrogation_Position=616; Antisense; GACCTGGTCTCAGAGGATCTTCTTT
>probe:Drosophila_2:1629716_a_at:480:691; Interrogation_Position=638; Antisense; TTTGGAACCTTCTTACCGTCAACAT
>probe:Drosophila_2:1629716_a_at:54:223; Interrogation_Position=718; Antisense; AAGGGCGCCATTGTCAATCTGGGAT
>probe:Drosophila_2:1629716_a_at:612:185; Interrogation_Position=769; Antisense; AACATGACCGTCTATGCTGCGAGCA
>probe:Drosophila_2:1629716_a_at:6:373; Interrogation_Position=795; Antisense; GAAGTTTGTCACCTACTTCTCCAAG
>probe:Drosophila_2:1629716_a_at:426:243; Interrogation_Position=847; Antisense; AATATCCACGTGCAGCTGGTGATGC
>probe:Drosophila_2:1629716_a_at:458:447; Interrogation_Position=867; Antisense; GATGCCCAACTTTGTGGTGACCAAA
>probe:Drosophila_2:1629716_a_at:136:231; Interrogation_Position=891; Antisense; AATGAATGCCTACACCGATCGGGTA
>probe:Drosophila_2:1629716_a_at:641:433; Interrogation_Position=923; Antisense; GAGGTCTGTTTTTCCCGAACGCATA

Paste this into a BLAST search page for me
GTTTCTGGACCCATGGCATTCAGTAGATCCGCACATACTTGGGACACCAAGGGACACCAACTGTTCAAACGACTGTGGCGGGCATAGACGTTGGCATTTTATGATGTATGAGCACCCCGAGAGTCGACCTGGTCTCAGAGGATCTTCTTTTTTGGAACCTTCTTACCGTCAACATAAGGGCGCCATTGTCAATCTGGGATAACATGACCGTCTATGCTGCGAGCAGAAGTTTGTCACCTACTTCTCCAAGAATATCCACGTGCAGCTGGTGATGCGATGCCCAACTTTGTGGTGACCAAAAATGAATGCCTACACCGATCGGGTAGAGGTCTGTTTTTCCCGAACGCATA

Full Affymetrix probeset data:

Annotations for 1629716_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720