FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629785_a_at:

>probe:Drosophila_2:1629785_a_at:299:583; Interrogation_Position=1509; Antisense; TGGCTCTAGTTCGGGCAATGGTGCT
>probe:Drosophila_2:1629785_a_at:476:227; Interrogation_Position=1525; Antisense; AATGGTGCTGGTACGTTAGCGGTAT
>probe:Drosophila_2:1629785_a_at:269:119; Interrogation_Position=1542; Antisense; AGCGGTATCGGGATCGGTGACCACC
>probe:Drosophila_2:1629785_a_at:615:497; Interrogation_Position=1558; Antisense; GTGACCACCGGAGCGGGAGCTGGAT
>probe:Drosophila_2:1629785_a_at:430:119; Interrogation_Position=1575; Antisense; AGCTGGATCCGGTACGGGTAGCTCC
>probe:Drosophila_2:1629785_a_at:397:489; Interrogation_Position=1586; Antisense; GTACGGGTAGCTCCAATTCCAATTC
>probe:Drosophila_2:1629785_a_at:330:9; Interrogation_Position=1607; Antisense; ATTCCAATTCCGGTGGCTCAAGCGG
>probe:Drosophila_2:1629785_a_at:710:569; Interrogation_Position=1621; Antisense; GGCTCAAGCGGTTCCGTTAGCGGTT
>probe:Drosophila_2:1629785_a_at:216:469; Interrogation_Position=1636; Antisense; GTTAGCGGTTCCGTATCCGGTTCTG
>probe:Drosophila_2:1629785_a_at:462:717; Interrogation_Position=1644; Antisense; TTCCGTATCCGGTTCTGGCAGCCAT
>probe:Drosophila_2:1629785_a_at:248:229; Interrogation_Position=1705; Antisense; AATGGCACGTCCAGCAGCCTGCTGG
>probe:Drosophila_2:1629785_a_at:457:717; Interrogation_Position=1779; Antisense; TTCGCCGGTGATGCTTCACCAGCAG
>probe:Drosophila_2:1629785_a_at:358:633; Interrogation_Position=2049; Antisense; TCCCAGCTCCCTCGTGGATATAAAG
>probe:Drosophila_2:1629785_a_at:389:543; Interrogation_Position=2064; Antisense; GGATATAAAGCCACCGATGGTTTGA

Paste this into a BLAST search page for me
TGGCTCTAGTTCGGGCAATGGTGCTAATGGTGCTGGTACGTTAGCGGTATAGCGGTATCGGGATCGGTGACCACCGTGACCACCGGAGCGGGAGCTGGATAGCTGGATCCGGTACGGGTAGCTCCGTACGGGTAGCTCCAATTCCAATTCATTCCAATTCCGGTGGCTCAAGCGGGGCTCAAGCGGTTCCGTTAGCGGTTGTTAGCGGTTCCGTATCCGGTTCTGTTCCGTATCCGGTTCTGGCAGCCATAATGGCACGTCCAGCAGCCTGCTGGTTCGCCGGTGATGCTTCACCAGCAGTCCCAGCTCCCTCGTGGATATAAAGGGATATAAAGCCACCGATGGTTTGA

Full Affymetrix probeset data:

Annotations for 1629785_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720