FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629827_s_at:

>probe:Drosophila_2:1629827_s_at:227:387; Interrogation_Position=2169; Antisense; GAAAATTATTCAGTTCCTGGCTTAA
>probe:Drosophila_2:1629827_s_at:335:689; Interrogation_Position=2175; Antisense; TATTCAGTTCCTGGCTTAAGTTTTT
>probe:Drosophila_2:1629827_s_at:569:157; Interrogation_Position=2283; Antisense; ACAAATTGATTTTAGCTATATTAGC
>probe:Drosophila_2:1629827_s_at:432:117; Interrogation_Position=2296; Antisense; AGCTATATTAGCTACTTGGTTAATA
>probe:Drosophila_2:1629827_s_at:278:455; Interrogation_Position=2342; Antisense; GATAATTGCGTTTTTATTGTCAGGG
>probe:Drosophila_2:1629827_s_at:382:719; Interrogation_Position=2347; Antisense; TTGCGTTTTTATTGTCAGGGAGTGA
>probe:Drosophila_2:1629827_s_at:55:497; Interrogation_Position=2360; Antisense; GTCAGGGAGTGAGTTTGCTTAAAAA
>probe:Drosophila_2:1629827_s_at:232:181; Interrogation_Position=2380; Antisense; AAAAACTCGTTTAGATCTGTCCTCG
>probe:Drosophila_2:1629827_s_at:17:639; Interrogation_Position=2386; Antisense; TCGTTTAGATCTGTCCTCGAGAAAT
>probe:Drosophila_2:1629827_s_at:552:451; Interrogation_Position=2393; Antisense; GATCTGTCCTCGAGAAATTATTTAT
>probe:Drosophila_2:1629827_s_at:644:697; Interrogation_Position=2417; Antisense; TTTAAATGCGATGGAGAGTTGGCGC
>probe:Drosophila_2:1629827_s_at:647:427; Interrogation_Position=2432; Antisense; GAGTTGGCGCCGAATCGAAAACTTT
>probe:Drosophila_2:1629827_s_at:403:189; Interrogation_Position=2451; Antisense; AACTTTACGCGCTTAAAAGCACGAG
>probe:Drosophila_2:1629827_s_at:439:709; Interrogation_Position=2463; Antisense; TTAAAAGCACGAGTTGGCATCCCTA

Paste this into a BLAST search page for me
GAAAATTATTCAGTTCCTGGCTTAATATTCAGTTCCTGGCTTAAGTTTTTACAAATTGATTTTAGCTATATTAGCAGCTATATTAGCTACTTGGTTAATAGATAATTGCGTTTTTATTGTCAGGGTTGCGTTTTTATTGTCAGGGAGTGAGTCAGGGAGTGAGTTTGCTTAAAAAAAAAACTCGTTTAGATCTGTCCTCGTCGTTTAGATCTGTCCTCGAGAAATGATCTGTCCTCGAGAAATTATTTATTTTAAATGCGATGGAGAGTTGGCGCGAGTTGGCGCCGAATCGAAAACTTTAACTTTACGCGCTTAAAAGCACGAGTTAAAAGCACGAGTTGGCATCCCTA

Full Affymetrix probeset data:

Annotations for 1629827_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720