FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629839_a_at:

>probe:Drosophila_2:1629839_a_at:192:373; Interrogation_Position=1053; Antisense; GAAGCTTATTAACCACCAGCGGGTG
>probe:Drosophila_2:1629839_a_at:66:563; Interrogation_Position=1077; Antisense; GGAACGACACCACAAACAACAAATG
>probe:Drosophila_2:1629839_a_at:92:115; Interrogation_Position=1144; Antisense; AGCAGAAATGCTACCCACAACAACC
>probe:Drosophila_2:1629839_a_at:158:203; Interrogation_Position=1165; Antisense; AACCAGCTAGTTGAACTTATCGCAA
>probe:Drosophila_2:1629839_a_at:398:679; Interrogation_Position=1194; Antisense; TAGTGCGTTTATTATCCAGTTTTTC
>probe:Drosophila_2:1629839_a_at:28:697; Interrogation_Position=1205; Antisense; TTATCCAGTTTTTCTTAGTCAAAGT
>probe:Drosophila_2:1629839_a_at:392:653; Interrogation_Position=1233; Antisense; TAACGAACGTTGCAATAAGCGACAA
>probe:Drosophila_2:1629839_a_at:483:239; Interrogation_Position=1291; Antisense; AATCAATATTTGTCTCTTAGCATAG
>probe:Drosophila_2:1629839_a_at:90:499; Interrogation_Position=1302; Antisense; GTCTCTTAGCATAGTTTCTTCATTT
>probe:Drosophila_2:1629839_a_at:598:273; Interrogation_Position=1319; Antisense; CTTCATTTTAATTCACTACGGCGTA
>probe:Drosophila_2:1629839_a_at:192:325; Interrogation_Position=1339; Antisense; GCGTAGCAAGCCGATATCCAATTGA
>probe:Drosophila_2:1629839_a_at:561:675; Interrogation_Position=1368; Antisense; TAGCAAAAAGTTTCGCAAGACCAAT
>probe:Drosophila_2:1629839_a_at:419:413; Interrogation_Position=1386; Antisense; GACCAATAACTTATTTCATTCCCGT
>probe:Drosophila_2:1629839_a_at:653:475; Interrogation_Position=938; Antisense; GTTATATTTTGCCTTCTTATTTCGA

Paste this into a BLAST search page for me
GAAGCTTATTAACCACCAGCGGGTGGGAACGACACCACAAACAACAAATGAGCAGAAATGCTACCCACAACAACCAACCAGCTAGTTGAACTTATCGCAATAGTGCGTTTATTATCCAGTTTTTCTTATCCAGTTTTTCTTAGTCAAAGTTAACGAACGTTGCAATAAGCGACAAAATCAATATTTGTCTCTTAGCATAGGTCTCTTAGCATAGTTTCTTCATTTCTTCATTTTAATTCACTACGGCGTAGCGTAGCAAGCCGATATCCAATTGATAGCAAAAAGTTTCGCAAGACCAATGACCAATAACTTATTTCATTCCCGTGTTATATTTTGCCTTCTTATTTCGA

Full Affymetrix probeset data:

Annotations for 1629839_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720