FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629843_s_at:

>probe:Drosophila_2:1629843_s_at:658:657; Interrogation_Position=1862; Antisense; TAAGTTTTTGGAATGCCCTCACCAC
>probe:Drosophila_2:1629843_s_at:92:565; Interrogation_Position=1871; Antisense; GGAATGCCCTCACCACATATAAATA
>probe:Drosophila_2:1629843_s_at:580:241; Interrogation_Position=1892; Antisense; AATACCACACGACGATAACCCAATT
>probe:Drosophila_2:1629843_s_at:604:245; Interrogation_Position=1913; Antisense; AATTATCCAATTTGCAATCCAGAGG
>probe:Drosophila_2:1629843_s_at:416:381; Interrogation_Position=1937; Antisense; GAACGGAAACCTTAGAACGATCGAT
>probe:Drosophila_2:1629843_s_at:193:451; Interrogation_Position=1955; Antisense; GATCGATCGATCAGCAAAACTGCGG
>probe:Drosophila_2:1629843_s_at:221:681; Interrogation_Position=2016; Antisense; TATGTTTGTCTTGTTTTTGTTCCGT
>probe:Drosophila_2:1629843_s_at:70:701; Interrogation_Position=2032; Antisense; TTGTTCCGTTTAATTGTAAGCGCGA
>probe:Drosophila_2:1629843_s_at:639:645; Interrogation_Position=2111; Antisense; TCATCAGACTTAGCAGCACTTTCTC
>probe:Drosophila_2:1629843_s_at:49:351; Interrogation_Position=2123; Antisense; GCAGCACTTTCTCTGCCGAAAAGTA
>probe:Drosophila_2:1629843_s_at:390:405; Interrogation_Position=2253; Antisense; GACGGAATAATCGTTGCAGTTCTTT
>probe:Drosophila_2:1629843_s_at:47:683; Interrogation_Position=2366; Antisense; TATGTCTAACTTATGTCACCCGTGT
>probe:Drosophila_2:1629843_s_at:543:679; Interrogation_Position=2377; Antisense; TATGTCACCCGTGTTTAAGCCAAAA
>probe:Drosophila_2:1629843_s_at:654:239; Interrogation_Position=2421; Antisense; AATACATTTTGTCTTTACACCACAT

Paste this into a BLAST search page for me
TAAGTTTTTGGAATGCCCTCACCACGGAATGCCCTCACCACATATAAATAAATACCACACGACGATAACCCAATTAATTATCCAATTTGCAATCCAGAGGGAACGGAAACCTTAGAACGATCGATGATCGATCGATCAGCAAAACTGCGGTATGTTTGTCTTGTTTTTGTTCCGTTTGTTCCGTTTAATTGTAAGCGCGATCATCAGACTTAGCAGCACTTTCTCGCAGCACTTTCTCTGCCGAAAAGTAGACGGAATAATCGTTGCAGTTCTTTTATGTCTAACTTATGTCACCCGTGTTATGTCACCCGTGTTTAAGCCAAAAAATACATTTTGTCTTTACACCACAT

Full Affymetrix probeset data:

Annotations for 1629843_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720