FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629967_s_at:

>probe:Drosophila_2:1629967_s_at:319:75; Interrogation_Position=1059; Antisense; AGGAGATTCATCACTTCAAGCTGTT
>probe:Drosophila_2:1629967_s_at:290:253; Interrogation_Position=1075; Antisense; CAAGCTGTTGACACGCGAGGAGTAC
>probe:Drosophila_2:1629967_s_at:474:669; Interrogation_Position=1097; Antisense; TACGATCGGTACCAGAGATTCGCCA
>probe:Drosophila_2:1629967_s_at:311:463; Interrogation_Position=1113; Antisense; GATTCGCCACCGAGGAGTATGTCCT
>probe:Drosophila_2:1629967_s_at:145:587; Interrogation_Position=1191; Antisense; TGGAGCCCGATTGTCGCAAGGTGAC
>probe:Drosophila_2:1629967_s_at:632:595; Interrogation_Position=1229; Antisense; TGTGGATACGTGTTCTGCCGCAATT
>probe:Drosophila_2:1629967_s_at:428:363; Interrogation_Position=1248; Antisense; GCAATTGTCTGCAGGGCTACCATAT
>probe:Drosophila_2:1629967_s_at:726:177; Interrogation_Position=1312; Antisense; AAACTCCTGCGAGTACACCGTGGAC
>probe:Drosophila_2:1629967_s_at:392:57; Interrogation_Position=1365; Antisense; ATGAGGCCAGCAATGTCACCATCAA
>probe:Drosophila_2:1629967_s_at:24:543; Interrogation_Position=1442; Antisense; GGTTGCATGCACATGGTCTGCACAC
>probe:Drosophila_2:1629967_s_at:3:105; Interrogation_Position=1503; Antisense; AGACTGAGTGGACACGCGACTGCAT
>probe:Drosophila_2:1629967_s_at:256:63; Interrogation_Position=1526; Antisense; ATGGGAGCCCACTGGTTCGGCTAAT
>probe:Drosophila_2:1629967_s_at:706:655; Interrogation_Position=1547; Antisense; TAATCCTTCGTCATCGTTGTACGTC
>probe:Drosophila_2:1629967_s_at:472:491; Interrogation_Position=1623; Antisense; GTAAAGACTGCTCGAACAACACCCT

Paste this into a BLAST search page for me
AGGAGATTCATCACTTCAAGCTGTTCAAGCTGTTGACACGCGAGGAGTACTACGATCGGTACCAGAGATTCGCCAGATTCGCCACCGAGGAGTATGTCCTTGGAGCCCGATTGTCGCAAGGTGACTGTGGATACGTGTTCTGCCGCAATTGCAATTGTCTGCAGGGCTACCATATAAACTCCTGCGAGTACACCGTGGACATGAGGCCAGCAATGTCACCATCAAGGTTGCATGCACATGGTCTGCACACAGACTGAGTGGACACGCGACTGCATATGGGAGCCCACTGGTTCGGCTAATTAATCCTTCGTCATCGTTGTACGTCGTAAAGACTGCTCGAACAACACCCT

Full Affymetrix probeset data:

Annotations for 1629967_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720