FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1629970_s_at:

>probe:Drosophila_2:1629970_s_at:402:317; Interrogation_Position=1005; Antisense; GCCTGATTGGTGAGGCCTTCGATCA
>probe:Drosophila_2:1629970_s_at:180:455; Interrogation_Position=1025; Antisense; GATCACTCTGATCAGATCTGCGGCG
>probe:Drosophila_2:1629970_s_at:43:451; Interrogation_Position=1039; Antisense; GATCTGCGGCGCTGTTATAAACATT
>probe:Drosophila_2:1629970_s_at:502:23; Interrogation_Position=1082; Antisense; ATATCCATCTGGACTGCCGACGGAA
>probe:Drosophila_2:1629970_s_at:186:379; Interrogation_Position=1115; Antisense; GAAGCTGCCCTTGAGATTGGTCACA
>probe:Drosophila_2:1629970_s_at:557:3; Interrogation_Position=1130; Antisense; ATTGGTCACAAGCTGCGCGATGCCC
>probe:Drosophila_2:1629970_s_at:179:529; Interrogation_Position=1162; Antisense; GGGACGCAACAACTCGCTGCAGTAT
>probe:Drosophila_2:1629970_s_at:394:115; Interrogation_Position=1212; Antisense; AGCAGGGCTCCAACGTGAAATCGAT
>probe:Drosophila_2:1629970_s_at:145:159; Interrogation_Position=1256; Antisense; AATAACTGGCCGCTCCTTATTCGGT
>probe:Drosophila_2:1629970_s_at:406:503; Interrogation_Position=1279; Antisense; GTCCGATCCCACACTGATTATTTTG
>probe:Drosophila_2:1629970_s_at:584:509; Interrogation_Position=1347; Antisense; GTGACTATTGTCTAAGACCCGCGTA
>probe:Drosophila_2:1629970_s_at:433:683; Interrogation_Position=1426; Antisense; TATCCGCTTTTTGTAGTCACTGTCA
>probe:Drosophila_2:1629970_s_at:450:255; Interrogation_Position=922; Antisense; CAAACAGGGCGGTCGTTGGGTCATT
>probe:Drosophila_2:1629970_s_at:449:31; Interrogation_Position=978; Antisense; ATAACCTATGGCTCGATGTGCTGCT

Paste this into a BLAST search page for me
GCCTGATTGGTGAGGCCTTCGATCAGATCACTCTGATCAGATCTGCGGCGGATCTGCGGCGCTGTTATAAACATTATATCCATCTGGACTGCCGACGGAAGAAGCTGCCCTTGAGATTGGTCACAATTGGTCACAAGCTGCGCGATGCCCGGGACGCAACAACTCGCTGCAGTATAGCAGGGCTCCAACGTGAAATCGATAATAACTGGCCGCTCCTTATTCGGTGTCCGATCCCACACTGATTATTTTGGTGACTATTGTCTAAGACCCGCGTATATCCGCTTTTTGTAGTCACTGTCACAAACAGGGCGGTCGTTGGGTCATTATAACCTATGGCTCGATGTGCTGCT

Full Affymetrix probeset data:

Annotations for 1629970_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720