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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630001_at:

>probe:Drosophila_2:1630001_at:460:457; Interrogation_Position=101; Antisense; TTTGGACCTTTTGCCCGATGACCAA
>probe:Drosophila_2:1630001_at:397:413; Interrogation_Position=105; Antisense; GACCTTTTGCCCGATGACCAATTGG
>probe:Drosophila_2:1630001_at:585:273; Interrogation_Position=108; Antisense; CTTTTGCCCGATGACCAATTGGAAC
>probe:Drosophila_2:1630001_at:616:283; Interrogation_Position=616; Antisense; CTGCGTATCATTTGAGGAACGGAAC
>probe:Drosophila_2:1630001_at:190:671; Interrogation_Position=621; Antisense; TATCATTTGAGGAACGGAACGACGC
>probe:Drosophila_2:1630001_at:214:563; Interrogation_Position=636; Antisense; GGAACGACGCCGAATGTCATCATTA
>probe:Drosophila_2:1630001_at:160:411; Interrogation_Position=641; Antisense; GACGCCGAATGTCATCATTAAGTAA
>probe:Drosophila_2:1630001_at:550:275; Interrogation_Position=66; Antisense; CTTTCACCTGTCCAGCAATTATGAC
>probe:Drosophila_2:1630001_at:412:309; Interrogation_Position=77; Antisense; CCAGCAATTATGACACGTATTCGAT
>probe:Drosophila_2:1630001_at:720:53; Interrogation_Position=86; Antisense; ATGACACGTATTCGATTTGGACCTT
>probe:Drosophila_2:1630001_at:432:395; Interrogation_Position=88; Antisense; GACACGTATTCGATTTGGACCTTTT
>probe:Drosophila_2:1630001_at:715:481; Interrogation_Position=93; Antisense; GTATTCGATTTGGACCTTTTGCCCG
>probe:Drosophila_2:1630001_at:487:5; Interrogation_Position=95; Antisense; ATTCGATTTGGACCTTTTGCCCGAT
>probe:Drosophila_2:1630001_at:680:291; Interrogation_Position=98; Antisense; CGATTTGGACCTTTTGCCCGATGAC

Paste this into a BLAST search page for me
TTTGGACCTTTTGCCCGATGACCAAGACCTTTTGCCCGATGACCAATTGGCTTTTGCCCGATGACCAATTGGAACCTGCGTATCATTTGAGGAACGGAACTATCATTTGAGGAACGGAACGACGCGGAACGACGCCGAATGTCATCATTAGACGCCGAATGTCATCATTAAGTAACTTTCACCTGTCCAGCAATTATGACCCAGCAATTATGACACGTATTCGATATGACACGTATTCGATTTGGACCTTGACACGTATTCGATTTGGACCTTTTGTATTCGATTTGGACCTTTTGCCCGATTCGATTTGGACCTTTTGCCCGATCGATTTGGACCTTTTGCCCGATGAC

Full Affymetrix probeset data:

Annotations for 1630001_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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