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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630002_s_at:

>probe:Drosophila_2:1630002_s_at:635:31; Interrogation_Position=4283; Antisense; ATAAGTTCTCCATTCGATTTTGTAT
>probe:Drosophila_2:1630002_s_at:528:601; Interrogation_Position=4316; Antisense; TGTTTCTTTAATTTTCCTTTATCAG
>probe:Drosophila_2:1630002_s_at:418:481; Interrogation_Position=4343; Antisense; GTATCTATGAAACATGAGGATCTCA
>probe:Drosophila_2:1630002_s_at:712:435; Interrogation_Position=4358; Antisense; GAGGATCTCAGTTCATATTGATCGT
>probe:Drosophila_2:1630002_s_at:427:21; Interrogation_Position=4372; Antisense; ATATTGATCGTGTTCTTCTGCCGTA
>probe:Drosophila_2:1630002_s_at:501:261; Interrogation_Position=4397; Antisense; CACCGCTTCTGTCCGTTAATGTAAA
>probe:Drosophila_2:1630002_s_at:131:475; Interrogation_Position=4499; Antisense; GTTAACTGATTAAGACCACTGAAAT
>probe:Drosophila_2:1630002_s_at:386:689; Interrogation_Position=4535; Antisense; TATTTACTAAGCAAAGCACACGCAA
>probe:Drosophila_2:1630002_s_at:607:255; Interrogation_Position=4622; Antisense; CAAAGTTACGCAATTTTCCCTCTAG
>probe:Drosophila_2:1630002_s_at:122:633; Interrogation_Position=4638; Antisense; TCCCTCTAGGCGCATTGCTTAAATA
>probe:Drosophila_2:1630002_s_at:53:177; Interrogation_Position=4679; Antisense; AAACCCATAGCGCAATATTTAATGT
>probe:Drosophila_2:1630002_s_at:624:491; Interrogation_Position=4702; Antisense; GTAAAACAGTTTTCCTTGCGTGTGA
>probe:Drosophila_2:1630002_s_at:482:621; Interrogation_Position=4718; Antisense; TGCGTGTGATGTTTGCTCTAGCTAC
>probe:Drosophila_2:1630002_s_at:414:335; Interrogation_Position=4732; Antisense; GCTCTAGCTACGTACAAATTCATCA

Paste this into a BLAST search page for me
ATAAGTTCTCCATTCGATTTTGTATTGTTTCTTTAATTTTCCTTTATCAGGTATCTATGAAACATGAGGATCTCAGAGGATCTCAGTTCATATTGATCGTATATTGATCGTGTTCTTCTGCCGTACACCGCTTCTGTCCGTTAATGTAAAGTTAACTGATTAAGACCACTGAAATTATTTACTAAGCAAAGCACACGCAACAAAGTTACGCAATTTTCCCTCTAGTCCCTCTAGGCGCATTGCTTAAATAAAACCCATAGCGCAATATTTAATGTGTAAAACAGTTTTCCTTGCGTGTGATGCGTGTGATGTTTGCTCTAGCTACGCTCTAGCTACGTACAAATTCATCA

Full Affymetrix probeset data:

Annotations for 1630002_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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