FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630027_s_at:

>probe:Drosophila_2:1630027_s_at:252:317; Interrogation_Position=2140; Antisense; GCCGCTGCCGAGTCTGAGAAGGACA
>probe:Drosophila_2:1630027_s_at:619:491; Interrogation_Position=2166; Antisense; GTAAAGAACCCGCACTAGCAAGAGA
>probe:Drosophila_2:1630027_s_at:402:539; Interrogation_Position=2240; Antisense; GGTTTTAATATTCATCCAGGCATTA
>probe:Drosophila_2:1630027_s_at:639:157; Interrogation_Position=2273; Antisense; ACAAGTCTAGCAGCAATGTTTACAT
>probe:Drosophila_2:1630027_s_at:166:373; Interrogation_Position=2349; Antisense; GAAGAGACCCAAAACAATTTATCAA
>probe:Drosophila_2:1630027_s_at:126:705; Interrogation_Position=2367; Antisense; TTATCAACCAACAACTCGTAGCAGT
>probe:Drosophila_2:1630027_s_at:282:487; Interrogation_Position=2384; Antisense; GTAGCAGTTTCAAACATTGTCCAAG
>probe:Drosophila_2:1630027_s_at:554:269; Interrogation_Position=2398; Antisense; CATTGTCCAAGTGTCTTTAAGTTTT
>probe:Drosophila_2:1630027_s_at:192:139; Interrogation_Position=2475; Antisense; ACGATTATATAGACGCAGCAATGCA
>probe:Drosophila_2:1630027_s_at:431:663; Interrogation_Position=2502; Antisense; TAAATTTCTTATGAGTTCCACGCAA
>probe:Drosophila_2:1630027_s_at:630:427; Interrogation_Position=2514; Antisense; GAGTTCCACGCAATTTCCGATTTGA
>probe:Drosophila_2:1630027_s_at:578:365; Interrogation_Position=2537; Antisense; GAATCAACTATCTTCATTTCGATTT
>probe:Drosophila_2:1630027_s_at:375:461; Interrogation_Position=2557; Antisense; GATTTATTCAGCTTTCTTAGTTTTC
>probe:Drosophila_2:1630027_s_at:495:341; Interrogation_Position=2567; Antisense; GCTTTCTTAGTTTTCATGTGACCCT

Paste this into a BLAST search page for me
GCCGCTGCCGAGTCTGAGAAGGACAGTAAAGAACCCGCACTAGCAAGAGAGGTTTTAATATTCATCCAGGCATTAACAAGTCTAGCAGCAATGTTTACATGAAGAGACCCAAAACAATTTATCAATTATCAACCAACAACTCGTAGCAGTGTAGCAGTTTCAAACATTGTCCAAGCATTGTCCAAGTGTCTTTAAGTTTTACGATTATATAGACGCAGCAATGCATAAATTTCTTATGAGTTCCACGCAAGAGTTCCACGCAATTTCCGATTTGAGAATCAACTATCTTCATTTCGATTTGATTTATTCAGCTTTCTTAGTTTTCGCTTTCTTAGTTTTCATGTGACCCT

Full Affymetrix probeset data:

Annotations for 1630027_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720