FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630055_a_at:

>probe:Drosophila_2:1630055_a_at:272:431; Interrogation_Position=3520; Antisense; GAGTACATCTACTTGCAGACTGTGC
>probe:Drosophila_2:1630055_a_at:533:605; Interrogation_Position=3582; Antisense; TGATCCGCGCACAAAACGAAAGTTT
>probe:Drosophila_2:1630055_a_at:530:387; Interrogation_Position=3628; Antisense; GAAAATCTCTACGACTGCCTGAGAG
>probe:Drosophila_2:1630055_a_at:349:425; Interrogation_Position=3648; Antisense; GAGAGATGGAAAGCTCACTCCCACC
>probe:Drosophila_2:1630055_a_at:271:301; Interrogation_Position=3667; Antisense; CCCACCACGGTGCAATATCTGAATC
>probe:Drosophila_2:1630055_a_at:82:257; Interrogation_Position=3709; Antisense; CAAATATCCGACTATGCCAATGCTA
>probe:Drosophila_2:1630055_a_at:49:681; Interrogation_Position=3732; Antisense; TATGGAAATCCACACGCAAATCGCC
>probe:Drosophila_2:1630055_a_at:528:255; Interrogation_Position=3747; Antisense; GCAAATCGCCTTCGGAACGGACTTT
>probe:Drosophila_2:1630055_a_at:356:557; Interrogation_Position=3796; Antisense; GGACTGAAGGTCCTACTGCAATCCG
>probe:Drosophila_2:1630055_a_at:614:235; Interrogation_Position=3815; Antisense; AATCCGCATCCGAGCTACAGTTGGT
>probe:Drosophila_2:1630055_a_at:167:153; Interrogation_Position=3831; Antisense; ACAGTTGGTTCTGCGTTAGAGCCCC
>probe:Drosophila_2:1630055_a_at:19:547; Interrogation_Position=3862; Antisense; GGATCGCAGCCAAGTTCACTAAACG
>probe:Drosophila_2:1630055_a_at:655:79; Interrogation_Position=3944; Antisense; AGAGTGGTTCTCTACGTTAGTTTAG
>probe:Drosophila_2:1630055_a_at:124:465; Interrogation_Position=3985; Antisense; GATTGTCAACGTTATTCCGTGTATT

Paste this into a BLAST search page for me
GAGTACATCTACTTGCAGACTGTGCTGATCCGCGCACAAAACGAAAGTTTGAAAATCTCTACGACTGCCTGAGAGGAGAGATGGAAAGCTCACTCCCACCCCCACCACGGTGCAATATCTGAATCCAAATATCCGACTATGCCAATGCTATATGGAAATCCACACGCAAATCGCCGCAAATCGCCTTCGGAACGGACTTTGGACTGAAGGTCCTACTGCAATCCGAATCCGCATCCGAGCTACAGTTGGTACAGTTGGTTCTGCGTTAGAGCCCCGGATCGCAGCCAAGTTCACTAAACGAGAGTGGTTCTCTACGTTAGTTTAGGATTGTCAACGTTATTCCGTGTATT

Full Affymetrix probeset data:

Annotations for 1630055_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720