FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630078_a_at:

>probe:Drosophila_2:1630078_a_at:675:495; Interrogation_Position=3926; Antisense; GTCATATTTTTGTCGAGTCTTTCTT
>probe:Drosophila_2:1630078_a_at:498:501; Interrogation_Position=3937; Antisense; GTCGAGTCTTTCTTGGTTGAATATC
>probe:Drosophila_2:1630078_a_at:297:389; Interrogation_Position=3993; Antisense; GAAAAACTGGGTCACATCGAAGCAA
>probe:Drosophila_2:1630078_a_at:369:163; Interrogation_Position=4055; Antisense; AAAACTGGCCACCTATAACTGAAGT
>probe:Drosophila_2:1630078_a_at:608:405; Interrogation_Position=4102; Antisense; GACTGCGAAACTGAACAGCCCACAT
>probe:Drosophila_2:1630078_a_at:24:323; Interrogation_Position=4119; Antisense; GCCCACATATGTAAGTTTGCACGCT
>probe:Drosophila_2:1630078_a_at:199:217; Interrogation_Position=4131; Antisense; AAGTTTGCACGCTGAACAAAACCAT
>probe:Drosophila_2:1630078_a_at:397:613; Interrogation_Position=4143; Antisense; TGAACAAAACCATGATACGCAGCTT
>probe:Drosophila_2:1630078_a_at:233:451; Interrogation_Position=4156; Antisense; GATACGCAGCTTGGAAAGTTTCCGG
>probe:Drosophila_2:1630078_a_at:624:393; Interrogation_Position=4191; Antisense; GAAATAATCCACGTCGAATCCTTTG
>probe:Drosophila_2:1630078_a_at:213:629; Interrogation_Position=4198; Antisense; TCCACGTCGAATCCTTTGTAAATTG
>probe:Drosophila_2:1630078_a_at:618:117; Interrogation_Position=4365; Antisense; AGCTATGAACACTTTTGTCTTTCTA
>probe:Drosophila_2:1630078_a_at:420:717; Interrogation_Position=4379; Antisense; TTGTCTTTCTATGTTTAAAACGGCG
>probe:Drosophila_2:1630078_a_at:3:197; Interrogation_Position=4397; Antisense; AACGGCGTTGTTTCTTGATTATAAT

Paste this into a BLAST search page for me
GTCATATTTTTGTCGAGTCTTTCTTGTCGAGTCTTTCTTGGTTGAATATCGAAAAACTGGGTCACATCGAAGCAAAAAACTGGCCACCTATAACTGAAGTGACTGCGAAACTGAACAGCCCACATGCCCACATATGTAAGTTTGCACGCTAAGTTTGCACGCTGAACAAAACCATTGAACAAAACCATGATACGCAGCTTGATACGCAGCTTGGAAAGTTTCCGGGAAATAATCCACGTCGAATCCTTTGTCCACGTCGAATCCTTTGTAAATTGAGCTATGAACACTTTTGTCTTTCTATTGTCTTTCTATGTTTAAAACGGCGAACGGCGTTGTTTCTTGATTATAAT

Full Affymetrix probeset data:

Annotations for 1630078_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720