FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630105_at:

>probe:Drosophila_2:1630105_at:599:481; Interrogation_Position=1454; Antisense; GTAGTCATAGCGTTTAGTCCTAAGC
>probe:Drosophila_2:1630105_at:291:705; Interrogation_Position=1467; Antisense; TTAGTCCTAAGCCAGTCGCTCTGTG
>probe:Drosophila_2:1630105_at:384:635; Interrogation_Position=1482; Antisense; TCGCTCTGTGTCCATTTGTCCTCAA
>probe:Drosophila_2:1630105_at:225:19; Interrogation_Position=1495; Antisense; ATTTGTCCTCAATCACACCACTTTA
>probe:Drosophila_2:1630105_at:665:155; Interrogation_Position=1509; Antisense; ACACCACTTTAGTCGGCTCACATAG
>probe:Drosophila_2:1630105_at:38:501; Interrogation_Position=1520; Antisense; GTCGGCTCACATAGTTTTCATTTTT
>probe:Drosophila_2:1630105_at:497:15; Interrogation_Position=1605; Antisense; ATTTATTTTCATTCACTTAGATTGG
>probe:Drosophila_2:1630105_at:501:17; Interrogation_Position=1706; Antisense; ATTTATTTTCTGTTAGCCAGCTGTT
>probe:Drosophila_2:1630105_at:452:475; Interrogation_Position=1717; Antisense; GTTAGCCAGCTGTTAAAAATTGTTT
>probe:Drosophila_2:1630105_at:229:171; Interrogation_Position=1851; Antisense; AAAGGGCTGCCAATAGTCACCGCAA
>probe:Drosophila_2:1630105_at:604:495; Interrogation_Position=1866; Antisense; GTCACCGCAAAACAACAGAGCTCAA
>probe:Drosophila_2:1630105_at:10:531; Interrogation_Position=1910; Antisense; GGTGAATGATATAGTCGCCTTCCCC
>probe:Drosophila_2:1630105_at:328:103; Interrogation_Position=1946; Antisense; ACCCGTTACTCAGCTTTTGGAAATG
>probe:Drosophila_2:1630105_at:512:275; Interrogation_Position=1958; Antisense; GCTTTTGGAAATGCGAACTCGAAAT

Paste this into a BLAST search page for me
GTAGTCATAGCGTTTAGTCCTAAGCTTAGTCCTAAGCCAGTCGCTCTGTGTCGCTCTGTGTCCATTTGTCCTCAAATTTGTCCTCAATCACACCACTTTAACACCACTTTAGTCGGCTCACATAGGTCGGCTCACATAGTTTTCATTTTTATTTATTTTCATTCACTTAGATTGGATTTATTTTCTGTTAGCCAGCTGTTGTTAGCCAGCTGTTAAAAATTGTTTAAAGGGCTGCCAATAGTCACCGCAAGTCACCGCAAAACAACAGAGCTCAAGGTGAATGATATAGTCGCCTTCCCCACCCGTTACTCAGCTTTTGGAAATGGCTTTTGGAAATGCGAACTCGAAAT

Full Affymetrix probeset data:

Annotations for 1630105_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720