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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630109_at:

>probe:Drosophila_2:1630109_at:393:65; Interrogation_Position=13; Antisense; ATGGTGTCGTTCGAGGAAGCCACTG
>probe:Drosophila_2:1630109_at:221:109; Interrogation_Position=134; Antisense; AGAAGCCCGGCGCTCTGGCTCTCAA
>probe:Drosophila_2:1630109_at:8:217; Interrogation_Position=169; Antisense; AAGTACGAGGCCTGGAGCTCCAACA
>probe:Drosophila_2:1630109_at:627:597; Interrogation_Position=17; Antisense; TGTCGTTCGAGGAAGCCACTGAACT
>probe:Drosophila_2:1630109_at:134:669; Interrogation_Position=172; Antisense; TACGAGGCCTGGAGCTCCAACAAGG
>probe:Drosophila_2:1630109_at:139:67; Interrogation_Position=176; Antisense; AGGCCTGGAGCTCCAACAAGGGTCT
>probe:Drosophila_2:1630109_at:300:587; Interrogation_Position=181; Antisense; TGGAGCTCCAACAAGGGTCTCTCCA
>probe:Drosophila_2:1630109_at:709:437; Interrogation_Position=25; Antisense; GAGGAAGCCACTGAACTCGCCAACA
>probe:Drosophila_2:1630109_at:29:203; Interrogation_Position=29; Antisense; AAGCCACTGAACTCGCCAACAAGTT
>probe:Drosophila_2:1630109_at:613:143; Interrogation_Position=39; Antisense; ACTCGCCAACAAGTTCACCAAGAAG
>probe:Drosophila_2:1630109_at:676:647; Interrogation_Position=53; Antisense; TCACCAAGAAGCCCACGGATGCCGA
>probe:Drosophila_2:1630109_at:305:257; Interrogation_Position=66; Antisense; CACGGATGCCGAGTTCTTGGAATTC
>probe:Drosophila_2:1630109_at:683:445; Interrogation_Position=70; Antisense; GATGCCGAGTTCTTGGAATTCTACG
>probe:Drosophila_2:1630109_at:554:309; Interrogation_Position=73; Antisense; GCCGAGTTCTTGGAATTCTACGGTC

Paste this into a BLAST search page for me
ATGGTGTCGTTCGAGGAAGCCACTGAGAAGCCCGGCGCTCTGGCTCTCAAAAGTACGAGGCCTGGAGCTCCAACATGTCGTTCGAGGAAGCCACTGAACTTACGAGGCCTGGAGCTCCAACAAGGAGGCCTGGAGCTCCAACAAGGGTCTTGGAGCTCCAACAAGGGTCTCTCCAGAGGAAGCCACTGAACTCGCCAACAAAGCCACTGAACTCGCCAACAAGTTACTCGCCAACAAGTTCACCAAGAAGTCACCAAGAAGCCCACGGATGCCGACACGGATGCCGAGTTCTTGGAATTCGATGCCGAGTTCTTGGAATTCTACGGCCGAGTTCTTGGAATTCTACGGTC

Full Affymetrix probeset data:

Annotations for 1630109_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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