Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630150_s_at:

>probe:Drosophila_2:1630150_s_at:2:237; Interrogation_Position=5235; Antisense; AATCGCCTGGCTCCTGTTTGGAGGA
>probe:Drosophila_2:1630150_s_at:555:713; Interrogation_Position=5276; Antisense; TTCATCGAGTGCAACGGCGCCAAGG
>probe:Drosophila_2:1630150_s_at:530:355; Interrogation_Position=5301; Antisense; GCACGTGCCACTTCTATGAGACGAT
>probe:Drosophila_2:1630150_s_at:354:409; Interrogation_Position=5320; Antisense; GACGATGACAAGCTTCTGGATGTAC
>probe:Drosophila_2:1630150_s_at:728:545; Interrogation_Position=5337; Antisense; GGATGTACAACCTGGAGTCCTCACA
>probe:Drosophila_2:1630150_s_at:172:589; Interrogation_Position=5349; Antisense; TGGAGTCCTCACAGCCGTTCGAGAG
>probe:Drosophila_2:1630150_s_at:549:471; Interrogation_Position=5365; Antisense; GTTCGAGAGGCCACAGCAGCAGACG
>probe:Drosophila_2:1630150_s_at:653:113; Interrogation_Position=5379; Antisense; AGCAGCAGACGATCAAGGCCGGCGA
>probe:Drosophila_2:1630150_s_at:433:63; Interrogation_Position=5415; Antisense; ATGTGTCCAGGTGCCAGGTGTGCAT
>probe:Drosophila_2:1630150_s_at:526:375; Interrogation_Position=5440; Antisense; GAAGAACTCCTCGTAGGACCTCCAA
>probe:Drosophila_2:1630150_s_at:516:295; Interrogation_Position=5611; Antisense; CGACGAACCAACACTGCTACAAATT
>probe:Drosophila_2:1630150_s_at:232:373; Interrogation_Position=5678; Antisense; GAAGTGCTAATTACCGACCGACCTG
>probe:Drosophila_2:1630150_s_at:410:161; Interrogation_Position=5707; Antisense; ACAATGCCATTTTTTATCTGCCAAT
>probe:Drosophila_2:1630150_s_at:146:673; Interrogation_Position=5806; Antisense; TAGCCTCGGTCGTATGTCCAAAAGT

Paste this into a BLAST search page for me
AATCGCCTGGCTCCTGTTTGGAGGATTCATCGAGTGCAACGGCGCCAAGGGCACGTGCCACTTCTATGAGACGATGACGATGACAAGCTTCTGGATGTACGGATGTACAACCTGGAGTCCTCACATGGAGTCCTCACAGCCGTTCGAGAGGTTCGAGAGGCCACAGCAGCAGACGAGCAGCAGACGATCAAGGCCGGCGAATGTGTCCAGGTGCCAGGTGTGCATGAAGAACTCCTCGTAGGACCTCCAACGACGAACCAACACTGCTACAAATTGAAGTGCTAATTACCGACCGACCTGACAATGCCATTTTTTATCTGCCAATTAGCCTCGGTCGTATGTCCAAAAGT

Full Affymetrix probeset data:

Annotations for 1630150_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime