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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630157_a_at:

>probe:Drosophila_2:1630157_a_at:37:223; Interrogation_Position=1265; Antisense; AAGGGATTCGCTTTGCAGCGTGGCT
>probe:Drosophila_2:1630157_a_at:412:89; Interrogation_Position=1281; Antisense; AGCGTGGCTAGGATACCCTTCCGAG
>probe:Drosophila_2:1630157_a_at:224:457; Interrogation_Position=1413; Antisense; GATACCGGCACTTATATGTACCCTA
>probe:Drosophila_2:1630157_a_at:63:23; Interrogation_Position=1445; Antisense; ATATATCTACTTAGGCTGCTGCTGT
>probe:Drosophila_2:1630157_a_at:593:71; Interrogation_Position=1457; Antisense; AGGCTGCTGCTGTACATCGAAGGCT
>probe:Drosophila_2:1630157_a_at:153:667; Interrogation_Position=1469; Antisense; TACATCGAAGGCTGCGGACTCTCAA
>probe:Drosophila_2:1630157_a_at:640:149; Interrogation_Position=1513; Antisense; ACATCAGCGCAATTAGCAATCACTT
>probe:Drosophila_2:1630157_a_at:261:607; Interrogation_Position=1537; Antisense; TGATGCATCCACAATCTAGCCGTAA
>probe:Drosophila_2:1630157_a_at:248:657; Interrogation_Position=1559; Antisense; TAATGTGCCTTACGAACCAGCTCTA
>probe:Drosophila_2:1630157_a_at:570:379; Interrogation_Position=1572; Antisense; GAACCAGCTCTATATACACCTTTAC
>probe:Drosophila_2:1630157_a_at:444:537; Interrogation_Position=1618; Antisense; GGTCTTCGAGGTGATTTCTTCGCAT
>probe:Drosophila_2:1630157_a_at:695:273; Interrogation_Position=1635; Antisense; CTTCGCATTTACTTTACGCAACCAA
>probe:Drosophila_2:1630157_a_at:378:253; Interrogation_Position=1657; Antisense; CAAGCAGCAGCACTCACTCAAAAAA
>probe:Drosophila_2:1630157_a_at:82:363; Interrogation_Position=1709; Antisense; GCAATCGGCCTGAAACAAGCAAATT

Paste this into a BLAST search page for me
AAGGGATTCGCTTTGCAGCGTGGCTAGCGTGGCTAGGATACCCTTCCGAGGATACCGGCACTTATATGTACCCTAATATATCTACTTAGGCTGCTGCTGTAGGCTGCTGCTGTACATCGAAGGCTTACATCGAAGGCTGCGGACTCTCAAACATCAGCGCAATTAGCAATCACTTTGATGCATCCACAATCTAGCCGTAATAATGTGCCTTACGAACCAGCTCTAGAACCAGCTCTATATACACCTTTACGGTCTTCGAGGTGATTTCTTCGCATCTTCGCATTTACTTTACGCAACCAACAAGCAGCAGCACTCACTCAAAAAAGCAATCGGCCTGAAACAAGCAAATT

Full Affymetrix probeset data:

Annotations for 1630157_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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