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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630165_s_at:

>probe:Drosophila_2:1630165_s_at:224:135; Interrogation_Position=6864; Antisense; ACGCGGTCATCGAGATTGCAGCTAT
>probe:Drosophila_2:1630165_s_at:508:95; Interrogation_Position=6876; Antisense; AGATTGCAGCTATACCAACGCGCGA
>probe:Drosophila_2:1630165_s_at:667:127; Interrogation_Position=6889; Antisense; ACCAACGCGCGATCGACTGTTTAAT
>probe:Drosophila_2:1630165_s_at:112:407; Interrogation_Position=6903; Antisense; GACTGTTTAATGTCCGGCATGGCAT
>probe:Drosophila_2:1630165_s_at:581:305; Interrogation_Position=6916; Antisense; CCGGCATGGCATTGGGCTCTGGAAA
>probe:Drosophila_2:1630165_s_at:211:561; Interrogation_Position=6957; Antisense; GGAAAGCTCTTTTTCATATTGTACA
>probe:Drosophila_2:1630165_s_at:192:363; Interrogation_Position=7053; Antisense; GAATTAATTTTACGACGGCAGCGTC
>probe:Drosophila_2:1630165_s_at:529:141; Interrogation_Position=7067; Antisense; ACGGCAGCGTCCTGTTTTATTGATG
>probe:Drosophila_2:1630165_s_at:554:91; Interrogation_Position=7114; Antisense; AGTTTATACGCCTAGAGCCACATAC
>probe:Drosophila_2:1630165_s_at:87:415; Interrogation_Position=7128; Antisense; GAGCCACATACACCTTAAACACAAT
>probe:Drosophila_2:1630165_s_at:687:197; Interrogation_Position=7186; Antisense; AACGATTTTGCACTAGAAACCGATC
>probe:Drosophila_2:1630165_s_at:30:177; Interrogation_Position=7202; Antisense; AAACCGATCGAGACAGTTGTGCTAG
>probe:Drosophila_2:1630165_s_at:695:377; Interrogation_Position=7234; Antisense; GAACCAGAACACGTCTGTTTAGTGT
>probe:Drosophila_2:1630165_s_at:289:175; Interrogation_Position=7344; Antisense; AAACCGTGTACAATTCCTTGTGAAT

Paste this into a BLAST search page for me
ACGCGGTCATCGAGATTGCAGCTATAGATTGCAGCTATACCAACGCGCGAACCAACGCGCGATCGACTGTTTAATGACTGTTTAATGTCCGGCATGGCATCCGGCATGGCATTGGGCTCTGGAAAGGAAAGCTCTTTTTCATATTGTACAGAATTAATTTTACGACGGCAGCGTCACGGCAGCGTCCTGTTTTATTGATGAGTTTATACGCCTAGAGCCACATACGAGCCACATACACCTTAAACACAATAACGATTTTGCACTAGAAACCGATCAAACCGATCGAGACAGTTGTGCTAGGAACCAGAACACGTCTGTTTAGTGTAAACCGTGTACAATTCCTTGTGAAT

Full Affymetrix probeset data:

Annotations for 1630165_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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