FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630169_a_at:

>probe:Drosophila_2:1630169_a_at:271:207; Interrogation_Position=2111; Antisense; AAGCGGCGAAGATGCTCTGGCATTT
>probe:Drosophila_2:1630169_a_at:143:447; Interrogation_Position=2121; Antisense; GATGCTCTGGCATTTAATTACTAAA
>probe:Drosophila_2:1630169_a_at:368:43; Interrogation_Position=2282; Antisense; ATCGAACTCGACAAAAACTCTCATT
>probe:Drosophila_2:1630169_a_at:438:177; Interrogation_Position=2296; Antisense; AAACTCTCATTTGCCATTTAGCGAA
>probe:Drosophila_2:1630169_a_at:103:431; Interrogation_Position=2440; Antisense; GAGTATGACCAAACTGATCAAGAAA
>probe:Drosophila_2:1630169_a_at:379:691; Interrogation_Position=2486; Antisense; TATTGATACAACTTTCGCTCTCTCT
>probe:Drosophila_2:1630169_a_at:370:695; Interrogation_Position=2498; Antisense; TTTCGCTCTCTCTTTGCAATTTCGT
>probe:Drosophila_2:1630169_a_at:92:361; Interrogation_Position=2513; Antisense; GCAATTTCGTGCTCCTTTTTATTCA
>probe:Drosophila_2:1630169_a_at:261:337; Interrogation_Position=2523; Antisense; GCTCCTTTTTATTCAATTTGCAATT
>probe:Drosophila_2:1630169_a_at:686:441; Interrogation_Position=2574; Antisense; GATGTAATTTTCGTTGTCTTCCTTC
>probe:Drosophila_2:1630169_a_at:390:467; Interrogation_Position=2586; Antisense; GTTGTCTTCCTTCCTTCGATCCAAT
>probe:Drosophila_2:1630169_a_at:43:687; Interrogation_Position=2611; Antisense; TATAATTTTGCCTCTTCCTTTGACA
>probe:Drosophila_2:1630169_a_at:170:721; Interrogation_Position=2625; Antisense; TTCCTTTGACACATTTCTCCACATG
>probe:Drosophila_2:1630169_a_at:313:399; Interrogation_Position=2632; Antisense; GACACATTTCTCCACATGTTTTAAA

Paste this into a BLAST search page for me
AAGCGGCGAAGATGCTCTGGCATTTGATGCTCTGGCATTTAATTACTAAAATCGAACTCGACAAAAACTCTCATTAAACTCTCATTTGCCATTTAGCGAAGAGTATGACCAAACTGATCAAGAAATATTGATACAACTTTCGCTCTCTCTTTTCGCTCTCTCTTTGCAATTTCGTGCAATTTCGTGCTCCTTTTTATTCAGCTCCTTTTTATTCAATTTGCAATTGATGTAATTTTCGTTGTCTTCCTTCGTTGTCTTCCTTCCTTCGATCCAATTATAATTTTGCCTCTTCCTTTGACATTCCTTTGACACATTTCTCCACATGGACACATTTCTCCACATGTTTTAAA

Full Affymetrix probeset data:

Annotations for 1630169_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720