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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630201_a_at:

>probe:Drosophila_2:1630201_a_at:39:547; Interrogation_Position=7228; Antisense; GGATGCATGCATTTTACCTGTACTC
>probe:Drosophila_2:1630201_a_at:430:11; Interrogation_Position=7260; Antisense; ATTCGAGTTCTGCTACGGATGTGCC
>probe:Drosophila_2:1630201_a_at:202:63; Interrogation_Position=7278; Antisense; ATGTGCCCGACCCTTCATGATGGGT
>probe:Drosophila_2:1630201_a_at:70:507; Interrogation_Position=7301; Antisense; GTGCCAAGTGCACTGTGTCCACATA
>probe:Drosophila_2:1630201_a_at:491:193; Interrogation_Position=7363; Antisense; AACTGCCTGTTCTACCTGAGGGATA
>probe:Drosophila_2:1630201_a_at:253:491; Interrogation_Position=7429; Antisense; GTCAAATTCGACACGGAACCCATGC
>probe:Drosophila_2:1630201_a_at:685:431; Interrogation_Position=7465; Antisense; GAGTCCAGCAGTTCGTCCAAGGCTC
>probe:Drosophila_2:1630201_a_at:318:423; Interrogation_Position=7525; Antisense; GAGACGCCGCAAGGACTAGTCGACA
>probe:Drosophila_2:1630201_a_at:117:375; Interrogation_Position=7564; Antisense; GAAGTTCCTGACAAGCACGCTGGCA
>probe:Drosophila_2:1630201_a_at:50:503; Interrogation_Position=7592; Antisense; GTCGCACCCACTACGTAGAGTATTT
>probe:Drosophila_2:1630201_a_at:557:625; Interrogation_Position=7652; Antisense; TGCCCATCTTTGATCTGACGGACTG
>probe:Drosophila_2:1630201_a_at:594:435; Interrogation_Position=7718; Antisense; GAGGACCCTGGGACACCGATGAGAT
>probe:Drosophila_2:1630201_a_at:318:453; Interrogation_Position=7740; Antisense; GATCTACAAGAACATGTGCTCCGAG
>probe:Drosophila_2:1630201_a_at:441:335; Interrogation_Position=7757; Antisense; GCTCCGAGGTAGGTGTTGGCTATCA

Paste this into a BLAST search page for me
GGATGCATGCATTTTACCTGTACTCATTCGAGTTCTGCTACGGATGTGCCATGTGCCCGACCCTTCATGATGGGTGTGCCAAGTGCACTGTGTCCACATAAACTGCCTGTTCTACCTGAGGGATAGTCAAATTCGACACGGAACCCATGCGAGTCCAGCAGTTCGTCCAAGGCTCGAGACGCCGCAAGGACTAGTCGACAGAAGTTCCTGACAAGCACGCTGGCAGTCGCACCCACTACGTAGAGTATTTTGCCCATCTTTGATCTGACGGACTGGAGGACCCTGGGACACCGATGAGATGATCTACAAGAACATGTGCTCCGAGGCTCCGAGGTAGGTGTTGGCTATCA

Full Affymetrix probeset data:

Annotations for 1630201_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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