Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630270_s_at:

>probe:Drosophila_2:1630270_s_at:7:717; Interrogation_Position=1034; Antisense; TTCGTCATGATCAAGGGCTGCTGCA
>probe:Drosophila_2:1630270_s_at:500:41; Interrogation_Position=1058; Antisense; ATCGGCTCCAAGAAGCGCATCATCA
>probe:Drosophila_2:1630270_s_at:221:351; Interrogation_Position=1129; Antisense; GCAGATCAAGCTCAAGTTCATCGAC
>probe:Drosophila_2:1630270_s_at:647:155; Interrogation_Position=1152; Antisense; ACACCTCGTCCAAGATGGGTCACGG
>probe:Drosophila_2:1630270_s_at:696:97; Interrogation_Position=1164; Antisense; AGATGGGTCACGGTCGCTTCCAGAC
>probe:Drosophila_2:1630270_s_at:13:627; Interrogation_Position=1192; Antisense; TGCCGACAAGCTGGCCTTCATGGGA
>probe:Drosophila_2:1630270_s_at:173:713; Interrogation_Position=1208; Antisense; TTCATGGGACCGCTCAAGAAGGATC
>probe:Drosophila_2:1630270_s_at:284:255; Interrogation_Position=1299; Antisense; CAAAATGTCGTGTCCGCGTTCAATT
>probe:Drosophila_2:1630270_s_at:465:327; Interrogation_Position=1314; Antisense; GCGTTCAATTGTCTGCTCGCTTCTA
>probe:Drosophila_2:1630270_s_at:702:671; Interrogation_Position=1337; Antisense; TACCACCAACTGCTGCGGTAGGGCA
>probe:Drosophila_2:1630270_s_at:701:571; Interrogation_Position=1382; Antisense; GGCTAAGCTGACTCATTAATCTTTT
>probe:Drosophila_2:1630270_s_at:406:203; Interrogation_Position=1426; Antisense; AAGACCACGTCACAGATTTTACAAT
>probe:Drosophila_2:1630270_s_at:83:53; Interrogation_Position=1509; Antisense; ATGTACATACCCAGGCTAAATTGTT
>probe:Drosophila_2:1630270_s_at:248:477; Interrogation_Position=1531; Antisense; GTTATTTATTATACCTCCTTAGAGC

Paste this into a BLAST search page for me
TTCGTCATGATCAAGGGCTGCTGCAATCGGCTCCAAGAAGCGCATCATCAGCAGATCAAGCTCAAGTTCATCGACACACCTCGTCCAAGATGGGTCACGGAGATGGGTCACGGTCGCTTCCAGACTGCCGACAAGCTGGCCTTCATGGGATTCATGGGACCGCTCAAGAAGGATCCAAAATGTCGTGTCCGCGTTCAATTGCGTTCAATTGTCTGCTCGCTTCTATACCACCAACTGCTGCGGTAGGGCAGGCTAAGCTGACTCATTAATCTTTTAAGACCACGTCACAGATTTTACAATATGTACATACCCAGGCTAAATTGTTGTTATTTATTATACCTCCTTAGAGC

Full Affymetrix probeset data:

Annotations for 1630270_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime