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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1630278_s_at:

>probe:Drosophila_2:1630278_s_at:637:585; Interrogation_Position=2545; Antisense; TGGGTACCCAGGATACCTTGCTTCA
>probe:Drosophila_2:1630278_s_at:205:619; Interrogation_Position=2563; Antisense; TGCTTCACCCACGTAGTCGTAGATA
>probe:Drosophila_2:1630278_s_at:218:95; Interrogation_Position=2583; Antisense; AGATAGGTCTAGCTCTGGTATTTTA
>probe:Drosophila_2:1630278_s_at:280:429; Interrogation_Position=2628; Antisense; GAGTTTCAAGCGGACTCGCATTCGA
>probe:Drosophila_2:1630278_s_at:687:271; Interrogation_Position=2646; Antisense; CATTCGAAGAAGTGCTCCCTCAGAT
>probe:Drosophila_2:1630278_s_at:702:507; Interrogation_Position=2657; Antisense; GTGCTCCCTCAGATCGGATAATGTA
>probe:Drosophila_2:1630278_s_at:514:345; Interrogation_Position=2697; Antisense; GCATCGAATGCGTAGGTCGTGCAGT
>probe:Drosophila_2:1630278_s_at:56:243; Interrogation_Position=2765; Antisense; AATATAGATAAGCACCGGGCCATTG
>probe:Drosophila_2:1630278_s_at:245:287; Interrogation_Position=2780; Antisense; CGGGCCATTGTATAAGTGCGTAGTC
>probe:Drosophila_2:1630278_s_at:67:201; Interrogation_Position=2825; Antisense; AACGCCTTAGTTTTACACTGAACAT
>probe:Drosophila_2:1630278_s_at:230:423; Interrogation_Position=2889; Antisense; GAGAAATGTGTGCACCCTCAGCAAT
>probe:Drosophila_2:1630278_s_at:50:35; Interrogation_Position=2959; Antisense; ATCAGTCCTCGAGTTTGCTTTTCTA
>probe:Drosophila_2:1630278_s_at:137:367; Interrogation_Position=2990; Antisense; GAATCTCAATCGAATGCTAGCCTAA
>probe:Drosophila_2:1630278_s_at:59:21; Interrogation_Position=3059; Antisense; ATATTGGTCCATCGATATTTGGCTA

Paste this into a BLAST search page for me
TGGGTACCCAGGATACCTTGCTTCATGCTTCACCCACGTAGTCGTAGATAAGATAGGTCTAGCTCTGGTATTTTAGAGTTTCAAGCGGACTCGCATTCGACATTCGAAGAAGTGCTCCCTCAGATGTGCTCCCTCAGATCGGATAATGTAGCATCGAATGCGTAGGTCGTGCAGTAATATAGATAAGCACCGGGCCATTGCGGGCCATTGTATAAGTGCGTAGTCAACGCCTTAGTTTTACACTGAACATGAGAAATGTGTGCACCCTCAGCAATATCAGTCCTCGAGTTTGCTTTTCTAGAATCTCAATCGAATGCTAGCCTAAATATTGGTCCATCGATATTTGGCTA

Full Affymetrix probeset data:

Annotations for 1630278_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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